Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000007_1.0.fa -t ./exonerate/SPP00000007_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) # Homo sapiens # Complete
        Target: gi|357434043|gb|JH378320.1|:subseq(185081,301187) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00216, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1030
   Query range: 0 -> 197
  Target range: 148600 -> 151187

      1 : MetSerLeuGlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetSerLeuGlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA
 148601 : ATGAGCCTCGGTCGCCTGTGCCGCTTGCTGAAGCCGGCGCTGCTCTGTGGGGCTCTGG : 148658

     21 : laAlaProGlyLeuAlaGlyThrMet  >>>> Target Intron 1 >>>>  Cys :     29
          ||||||||||||||||||||||||||           1315 bp           |||
          laAlaProGlyLeuAlaGlyThrMet++                         ++Cys
 148659 : CCGCGCCCGGCCTGGCCGGCACCATGgt.........................agTGC : 150000

     30 : AlaSerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspI :     49
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaSerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspI
 150001 : GCGTCCCGGGACGACTGGCGCTGTGCGCGCTCCATGCACGAGTTTTCCGCCAAGGACA : 150060

     50 : leAspGlyHisMetValAsnLeuAspLysTyr{Ar}  >>>> Target Intron 2 :     60
          ||||||||||||||||||||||||||||||||{||}            74 bp     
          leAspGlyHisMetValAsnLeuAspLysTyr{Ar}++                    
 150061 : TCGACGGGCACATGGTTAACCTGGACAAGTAC{CG}gt.................... : 150097

     61 :  >>>>  {g}GlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThr :     76
                 {|}||||||||||||||||||||||||||||||||||||   |||||||||
               ++{g}GlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThr
 150098 : .....ag{G}GGCTTCGTGTGCATCGTCACCAACGTGGCCTCCCAGTGAGGCAAAACC : 150215

     77 : GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuA :     96
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuA
 150216 : GAAGTGAACTACACTCAGCTTGTCGACCTGCACGCCCGATACGCCGAGTGTGGTTTGC : 150275

     97 : rgIleLeuAlaPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron :    109
          ||||||||||||||||||||||||||||||||||||||            150 bp  
          rgIleLeuAlaPheProCysAsnGlnPheGlyLysGln++                  
 150276 : GGATCCTGGCCTTCCCCTGCAACCAGTTCGGGAAGCAGgt.................. : 150316

    110 :  3 >>>>  GluProGlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnV :    125
                   |||||||||||||||||||||||||||||||||||||||||||||||||
                 ++GluProGlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnV
 150317 : .......agGAGCCAGGGAGCAACGAAGAGATCAAAGAATTCGCCGCTGGCTATAACG : 150512

    126 : alLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr :    144
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr
 150513 : TCAAATTCGACATGTTCAGCAAGATCTGCGTGAATGGGGATGACGCCCACCCGCTGTG : 150569

    145 : pLysTrpMetLysIleGlnProLysGlyLysGlyIleLeuGly{As}  >>>> Targ :    159
          |||||||||||||||||||||||||||||||||||||||||||{||}           
          pLysTrpMetLysIleGlnProLysGlyLysGlyIleLeuGly{As}++         
 150570 : GAAGTGGATGAAGATCCAGCCCAAGGGCAAGGGCATCCTGGGA{AA}gt......... : 150618

    160 : et Intron 4 >>>>  {n}AlaIleLysTrpAsnPheThrLys  >>>> Target :    168
           260 bp           {|}||||||||||||||||||||||||            1
                          ++{n}AlaIleLysTrpAsnPheThrLys++           
 150619 : ................ag{T}GCCATCAAGTGGAACTTCACCAAGgt........... : 150903

    169 :  Intron 5 >>>>  PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly :    181
          21 bp           ||||||||||||||||||||||||||||||||||||||||||
                        ++PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly
 150904 : ..............agTTTCTCATCGACAAGAATGGCTGTGTGGTGAAGCGGTACGGA : 151061

    182 : ProMetGluGluProLeu  >>>> Target Intron 6 >>>>  ValIleGluLy :    191
          |||||||||||||||! !            76 bp            |||||||||||
          ProMetGluGluProGln++                         ++ValIleGluLy
 151062 : CCCATGGAGGAACCCCAGgt.........................agGTGATAGAGAA : 151167

    192 : sAspLeuProHisTyrPhe :    197
          |||||||||||||||||||
          sAspLeuProHisTyrPhe
 151168 : GGACCTGCCCCACTATTTC : 151187

vulgar: SPP00000007_1.0 0 197 . gi|357434043|gb|JH378320.1|:subseq(185081,301187) 148600 151187 + 1030 M 28 84 5 0 2 I 0 1311 3 0 2 M 31 93 S 0 2 5 0 2 I 0 70 3 0 2 S 1 1 M 48 144 5 0 2 I 0 146 3 0 2 M 50 150 S 0 2 5 0 2 I 0 256 3 0 2 S 1 1 M 8 24 5 0 2 I 0 117 3 0 2 M 20 60 5 0 2 I 0 72 3 0 2 M 10 30
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	gene	148601	151187	1030	+	.	gene_id 1 ; sequence SPP00000007_1.0 ; gene_orientation +
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	148601	148684	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	148601	148684	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	148685	148686	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	148685	149999	.	+	.	intron_id 1
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	149998	149999	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	150000	150094	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	150000	150094	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	150095	150096	.	+	.	intron_id 2 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	150095	150168	.	+	.	intron_id 2
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	150167	150168	.	+	.	intron_id 1 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	150169	150313	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	150169	150313	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	150314	150315	.	+	.	intron_id 3 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	150314	150463	.	+	.	intron_id 3
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	150462	150463	.	+	.	intron_id 2 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	150464	150615	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	150464	150615	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	150616	150617	.	+	.	intron_id 4 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	150616	150875	.	+	.	intron_id 4
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	150874	150875	.	+	.	intron_id 3 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	150876	150900	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	150876	150900	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	150901	150902	.	+	.	intron_id 5 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	150901	151021	.	+	.	intron_id 5
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	151020	151021	.	+	.	intron_id 4 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	151022	151081	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	151022	151081	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice5	151082	151083	.	+	.	intron_id 6 ; splice_site "GT"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	intron	151082	151157	.	+	.	intron_id 6
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	splice3	151156	151157	.	+	.	intron_id 5 ; splice_site "AG"
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	cds	151158	151187	.	+	.	
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	exon	151158	151187	.	+	.	insertions 0 ; deletions 0
gi|357434043|gb|JH378320.1|:subseq(185081,301187)	exonerate:protein2genome:local	similarity	148601	151187	1030	+	.	alignment_id 1 ; Query SPP00000007_1.0 ; Align 148601 1 84 ; Align 150000 29 93 ; Align 150170 61 144 ; Align 150464 109 150 ; Align 150877 160 24 ; Align 151022 168 60 ; Align 151158 188 30
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis