Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000005_1.0.fa -t ./exonerate/SPP00000005_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) # Homo sapiens # Complete
        Target: gi|357434248|gb|JH378115.1|:subseq(22809044,304224) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 999
   Query range: 0 -> 190
  Target range: 154224 -> 149999

      1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL
 154224 : ATGGCCTTCATTGCCAAGTCCTTCTACGACCTCAGTGCCATCAGCCTGGATGGGGAGA : 154167

     21 : ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe
 154166 : AGGTAGATTTCAATACATTCCGGGGCAGGGCCGTGCTGATTGAGAATGTGGCTTCGCT : 154110

     40 : uUnkGlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro :     58
          |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
          u***GlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro
 154109 : GTGAGGCACAACCACCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCC : 154053

     59 : ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Tar :     75
          ||||||||||||||||||||||||||||||||||||||||||||||||          
          ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++        
 154052 : CGGCGCCTGGTGGTCCTTGGCTTCCCTTGCAACCAATTTGGACATCAGgt........ : 154000

     76 : get Intron 1 >>>>  GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys :     87
           3655 bp           |||||||||||||||||||||||||||||||||||||||
                           ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys
 153999 : .................agGAGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAG : 150311

     88 : TyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluV :    107
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluV
 150310 : TATGTCCGCCCTGGGGGTGGATACCAGCCCACCTTCACCCTTGTCCAAAAATGTGAGG : 150251

    108 : alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr :    126
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr
 150250 : TGAATGGGCAGAACGAGCATCCTGTCTTCGCCTATCTGAAGGACAAGCTCCCCTACCC : 150194

    127 : oTyrAspAspProPheSerLeuMetThrAspProLysLeuIleIleTrpSerProVal :    145
          |||||||||||||||||||||||||||||||||||||!!!||||||||||||||||||
          oTyrAspAspProPheSerLeuMetThrAspProLysPheIleIleTrpSerProVal
 150193 : TTATGATGACCCCTTTTCCCTCATGACCGATCCCAAGTTCATCATTTGGAGCCCCGTG : 150137

    146 : ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP :    165
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP
 150136 : CGCCGCTCAGATGTGGCCTGGAACTTTGAGAAGTTCCTCATAGGGCCGGAGGGAGAGC : 150077

    166 : roPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysAr :    184
          |||||||||||||||||||||||||||||||||||!:!||||||||||||||||||||
          roPheArgArgTyrSerArgThrPheProThrIleSerIleGluProAspIleLysAr
 150076 : CCTTCCGACGCTACAGCCGCACCTTCCCAACCATCAGCATCGAGCCTGACATCAAGCG : 150020

    185 : gLeuLeuLysValAlaIle :    190
          |||||||||||||||||||
          gLeuLeuLysValAlaIle
 150019 : CCTCCTTAAAGTTGCCATA : 150000

vulgar: SPP00000005_1.0 0 190 . gi|357434248|gb|JH378115.1|:subseq(22809044,304224) 154224 149999 - 999 M 74 222 5 0 2 I 0 3651 3 0 2 M 116 348
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	gene	150000	154224	999	-	.	gene_id 1 ; sequence SPP00000005_1.0 ; gene_orientation +
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	cds	154003	154224	.	-	.	
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	exon	154003	154224	.	-	.	insertions 0 ; deletions 0
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	splice5	154001	154002	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	intron	150348	154002	.	-	.	intron_id 1
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	splice3	150348	150349	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	cds	150000	150347	.	-	.	
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	exon	150000	150347	.	-	.	insertions 0 ; deletions 0
gi|357434248|gb|JH378115.1|:subseq(22809044,304224)	exonerate:protein2genome:local	similarity	150000	154224	999	-	.	alignment_id 1 ; Query SPP00000005_1.0 ; Align 154225 1 222 ; Align 150348 75 348
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis