Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000004_1.0.fa -t ./exonerate/SPP00000004_1.0_3_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: gi|357434211|gb|JH378152.1|:subseq(15395838,300562) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 596
   Query range: 7 -> 203
  Target range: 150580 -> 149999

      8 : AlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerAlaArgProLeuAlaGlyG :     27
          |||||||||! !|||:!!|||! !|||||||||.!!! !|||! !|||:!!|||||||
          AlaAlaAlaGluAlaSerGlnLeuValTyrAlaLeuLeuAlaLeuProMetAlaGlyG
 150580 : GCGGCGGCGGAGGCGTCCCAGTTGGTGTACGCCCTCTTGGCGCTCCCCATGGCCGGCG : 150523

     28 : lyGluProValSerLeuGlySerLeuArgGlyLysValLeuLeuIleGluAsnValAl :     46
          |||||||||||||||||.!!|||||||||||||||!.!|||||||||:!!||||||||
          lyGluProValSerLeuSerSerLeuArgGlyLysAlaLeuLeuIleLysAsnValAl
 150522 : GGGAGCCTGTAAGTCTAAGCTCCCTGCGGGGCAAGGCGCTGCTTATCAAGAATGTGGC : 150466

     47 : aSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArg :     65
          ||||!!!   ||||||||||||||||||||||||||||||||||||||||||||||||
          aSerPhe***GlyThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArg
 150465 : GTCCTTCTGAGGCACCACGGTCCGGGACTACACCCAGATGAACGAGCTGCAGCGGCGC : 150409

     66 : LeuGlyProArgGlyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGlnG :     85
          |||||||||!!!! !|||||||||||||||||||||||||||||||||||||||||||
          LeuGlyProSerAspLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGlnG
 150408 : CTTGGGCCCAGTGACCTGGTGGTGCTCGGCTTCCCGTGCAACCAGTTTGGGCATCAGG : 150349

     86 : luAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrValArgProGlyGlyGl :    104
          |||||||||||||||||||||||||||||||||||||||||||| !!|||||||||||
          luAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrVal***ProGlyGlyGl
 150348 : AGAACGCCAAGAATGAAGAGATTCTGAATTCCCTGAAGTATGTCTGACCTGGTGGTGG : 150292

    105 : yPheGluProAsnPheMetLeuPheGluLysCysGluValAsnGlyAlaGlyAlaHis :    123
          |||||||! !||||||  !||||||! !||| !!||||||||||||||| !!  !|||
          yPheGluLeuAsnPheSerLeuPheGlyLysArgGluValAsnGlyAlaArgLeuHis
 150291 : GTTCGAGCTCAACTTCTCGCTCTTCGGGAAGCGCGAGGTCAACGGTGCAAGGTTGCAC : 150235

    124 : ProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSerAspAspAlaThrAlaL :    143
          |||||||||||||||||||||..! !!! !! !  !|||:!!      .!!||| !!!
          ProLeuPheAlaPheLeuArgArgProCysGlnArgProAla------ThrThrProA
 150234 : CCTCTTTTCGCCTTCCTGCGGAGGCCCTGCCAACGCCCAGCA------ACGACTCCAC : 150181

    144 : euMetThrAspProLysLeuIleThrTrpSerProValCysArgAsnAspValAlaTr :    162
           !   :!!   |||!  ! !  ! !!  !|||! !||||||!.!|||:!!||||||||
          rgHisSer***ProThrTrpSerProValSerLeuValCysHisAsnAsnValAlaTr
 150180 : GGCACTCATGACCGACCTGGTCTCCAGTGTCTCTGGTGTGTCACAACAATGTTGCCTG : 150124

    163 : pAsnPheGluLysPheLeuValGlyProAspGlyValProLeuArgArgTyrSer--A :    181
          |||| !!:!!|||||||||! !||||||  !|||!.!|||:!!!.!|||||||||## 
          pAsnValLysLysPheLeuAspGlyProThrGlyAlaProValHisArgTyrSer##-
 150123 : GAACGTCAAGAAGTTCCTGGATGGCCCTACCGGTGCCCCCGTGCACAGGTACAGCTG- : 150065

    182 : rgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeuLeuSerGlnGlyPr :    200
             !!||||||||||||||||||||| !!||||||:!!|||||||||||||||  ! !
          --GlyPheGlnThrIleAspIleGluAlaAspIleGlnAlaLeuLeuSerGlnGlnSe
 150064 : --GGCTTCCAGACCATTGACATCGAGGCTGACATTCAAGCCCTGTTGTCCCAACAGTC : 150011

    201 : oSerCysAla :    203
          !|||  !|||
          rSerHisAla
 150010 : CAGCCATGCT : 150000

vulgar: SPP00000004_1.0 7 203 . gi|357434211|gb|JH378152.1|:subseq(15395838,300562) 150580 149999 - 596 M 130 390 G 2 0 M 41 123 F 0 2 G 1 0 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434211|gb|JH378152.1|:subseq(15395838,300562)	exonerate:protein2genome:local	gene	150000	150580	596	-	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation .
gi|357434211|gb|JH378152.1|:subseq(15395838,300562)	exonerate:protein2genome:local	cds	150000	150580	.	-	.	
gi|357434211|gb|JH378152.1|:subseq(15395838,300562)	exonerate:protein2genome:local	exon	150000	150580	.	-	.	insertions 0 ; deletions 3 ; frameshifts 2
gi|357434211|gb|JH378152.1|:subseq(15395838,300562)	exonerate:protein2genome:local	similarity	150000	150580	596	-	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 150581 8 390 ; Align 150191 140 123 ; Align 150066 182 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis