Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000004_1.0.fa -t ./exonerate/SPP00000004_1.0_2_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: gi|357434173|gb|JH378190.1|:subseq(8789860,300702) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 800
   Query range: 50 -> 203
  Target range: 149993 -> 150702

     51 : ThrThrValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgG :     70
          ......||||||||||||||||||||||||||||||||||||||||||||||||||||
          UnkUnkValArgAspTyrThrGlnMetAsnGluLeuGlnArgArgLeuGlyProArgG
 149994 : NNNNNNGTCCGGGACTACACCCAGATGAACGAGCTGCAGCGGCGCCTCGGGCCCCGGG : 150051

     71 : lyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln  >>>> Target  :     85
          ||||||||||||||||||||||||||||||||||||||||||||            25
          lyLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++            
 150052 : GCCTGGTGGTGCTCGGCTTCCCGTGCAACCAGTTTGGACATCAGgt............ : 150098

     86 : Intron 1 >>>>  GluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrV :     99
          0 bp           |||||||||||||||||||||||||||||||||||||||||||
                       ++GluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrV
 150099 : .............agGAGAACGCCAAGAACGAAGAGATTTTGAATTCCCTCAAGTACG : 150388

    100 : alArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAs :    118
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAs
 150389 : TCCGACCTGGTGGTGGGTTCGAGCCCAACTTCATGCTCTTCGAGAAGTGCGAGGTGAA : 150445

    119 : nGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSer :    137
          ||||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||
          nGlyAlaGlySerHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSer
 150446 : CGGTGCGGGGTCGCACCCTCTCTTTGCCTTCCTGCGGGAGGCCCTGCCAGCGCCCAGC : 150502

    138 : AspAspAlaThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysA :    157
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AspAspAlaThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysA
 150503 : GACGATGCCACTGCGCTCATGACCGACCCCAAGCTCATCACCTGGTCTCCGGTATGCC : 150562

    158 : rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLe :    176
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!
          rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProVa
 150563 : GAAATGATGTTGCATGGAACTTTGAGAAGTTCCTGGTGGGCCCTGACGGTGTTCCTGT : 150619

    177 : uArgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeu :    195
          !|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lArgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeu
 150620 : GCGCAGGTACAGCCGCCGCTTCCAGACCATTGACATCGAGCCTGACATCGAAGCCCTG : 150676

    196 : LeuSerGlnGlyProSerCysAla :    203
          ||||||||||||||||||||||||
          LeuSerGlnGlyProSerCysAla
 150677 : CTTTCCCAAGGGCCCAGCTGTGCC : 150702

vulgar: SPP00000004_1.0 50 203 . gi|357434173|gb|JH378190.1|:subseq(8789860,300702) 149993 150702 + 800 M 34 102 5 0 2 I 0 246 3 0 2 M 119 357
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	gene	149994	150702	800	+	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation +
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	cds	149994	150095	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	exon	149994	150095	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	splice5	150096	150097	.	+	.	intron_id 1 ; splice_site "GT"
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	intron	150096	150345	.	+	.	intron_id 1
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	splice3	150344	150345	.	+	.	intron_id 0 ; splice_site "AG"
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	cds	150346	150702	.	+	.	
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	exon	150346	150702	.	+	.	insertions 0 ; deletions 0
gi|357434173|gb|JH378190.1|:subseq(8789860,300702)	exonerate:protein2genome:local	similarity	149994	150702	800	+	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 149994 51 102 ; Align 150346 85 357
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis