Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000004_1.0.fa -t ./exonerate/SPP00000004_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) # Homo sapiens # Complete
        Target: gi|357434244|gb|JH378119.1|:subseq(20949864,300512) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 805
   Query range: 2 -> 203
  Target range: 150600 -> 149999

      3 : AlaAlaArgLeuAlaAlaAlaAlaAlaAlaAlaGlnSerValTyrAlaPheSerAlaA :     22
          ..!|||  !! !  !|||||||||||||||||||||!!!|||||||||! !|||||||
          CysAlaAlaTrpLeuAlaAlaAlaAlaAlaAlaGlnTrpValTyrAlaSerSerAlaA
 150600 : TGTGCTGCTTGGCTAGCGGCGGCCGCGGCTGCCCAGTGGGTGTACGCCTCCTCGGCGC : 150543

     23 : rgProLeuAlaGlyGlyGluProVal-SerLeuGlySerLeuArgGlyLysValLeuL :     41
          |||||! ! !!!.!|||...   :!!#..!! !||||||||||||||||||! !||||
          rgProTrpProAlaGlySer---Leu#GluProGlySerLeuArgGlyLysGlyLeuL
 150542 : GCCCCTGGCCGGCGGGGAGC---CTGTGAGCCCGGTTCTCTGCGGGGCAAGGGGCTGC : 150488

     42 : euIleGluAsnValAlaSerLeuUnkGlyThrThrValArgAspTyrThrGlnMetAs :     60
          |||||||||||||||||||||||   ||| !!|||||||||! !||||||||||||||
          euIleGluAsnValAlaSerLeu***GlyProThrValArgAlaTyrThrGlnMetAs
 150487 : TTATCGAGAATGTGGCGTCCCTCTGAGGCCCCACGGTCCGGGCCTACACCCAGATGAA : 150431

     61 : nGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuGlyPheProCysAsn :     79
          |||||||||||||||||||||||||||||||||||||||||||.!!|||||| !!|||
          nGluLeuGlnArgArgLeuGlyProArgGlyLeuValValLeuSerPheProGlyAsn
 150430 : CGAGCTGCAGCGGCGCCTTGGGCCCCGGGGCCTGGTGGTGCTCAGCTTCCCGGGCAAC : 150374

     80 : GlnPheGlyHisGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrV :     99
          ! !||||||! !||||||||||||||||||||||||||||||||||||||||||||||
          ProPheGlyProGlnGluAsnAlaLysAsnGluGluIleLeuAsnSerLeuLysTyrV
 150373 : CCGTTTGGACCTCAGGAGAACGCCAAGAACGAAGAGATTTTGAATTCCCTCAAGTACG : 150314

    100 : alArgProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValAs :    118
          || !!|||||||||||||||||||||||||||||||||||||||||||||||||||!!
          al***ProGlyGlyGlyPheGluProAsnPheMetLeuPheGluLysCysGluValLy
 150313 : TCTGACCTGGTGGTGGGTTCGAGCCCAACTTCATGCTCTTCGAGAAGTGCGAGGTGAA : 150257

    119 : nGlyAlaGlyAlaHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSer :    137
          .|||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||
          sGlyAlaGlySerHisProLeuPheAlaPheLeuArgGluAlaLeuProAlaProSer
 150256 : GGGTGCGGGGTCGCACCCTCTCTTCGCCTTCCTGCGGGAGGCCCTGCCAGCGCCCAGC : 150200

    138 : AspAspAlaThrAlaLeuMetThrAspProLysLeuIleThrTrpSerProValCysA :    157
          ||||||||||||||||||||||||||||||||||||||||||!! |||||||||||||
          AspAspAlaThrAlaLeuMetThrAspProLysLeuIleThr***SerProValCysA
 150199 : GACGATGCCACTGCGCTCATGACCGACCCCAAGCTCATCACCTGATCTCCGGTATGCC : 150140

    158 : rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProLe :    176
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!
          rgAsnAspValAlaTrpAsnPheGluLysPheLeuValGlyProAspGlyValProVa
 150139 : GAAATGATGTTGCATGGAACTTCGAGAAGTTCCTCGTGGGCCCTGACGGTGTTCCTGT : 150083

    177 : uArgArgTyrSerArgArgPheGlnThrIleAspIleGluProAspIleGluAlaLeu :    195
          !|||||||||||||||||||||||||||||||||! !||||||||||||:!!||||||
          lArgArgTyrSerArgArgPheGlnThrIleAspLysGluProAspIleLysAlaLeu
 150082 : GCGCAGGTACAGCCGCCGCTTCCAGACCATTGACAAAGAGCCTGACATCAAAGCCCTG : 150026

    196 : LeuSerGlnGlyProSerCysAla :    203
          |||||||||||||||!!!||||||
          LeuSerGlnGlyProArgCysAla
 150025 : CTGTCCCAAGGGCCCAGATGTGCC : 150000

vulgar: SPP00000004_1.0 2 203 . gi|357434244|gb|JH378119.1|:subseq(20949864,300512) 150600 149999 - 805 M 26 78 G 1 0 M 1 3 F 0 1 M 173 519
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434244|gb|JH378119.1|:subseq(20949864,300512)	exonerate:protein2genome:local	gene	150000	150600	805	-	.	gene_id 1 ; sequence SPP00000004_1.0 ; gene_orientation .
gi|357434244|gb|JH378119.1|:subseq(20949864,300512)	exonerate:protein2genome:local	cds	150000	150600	.	-	.	
gi|357434244|gb|JH378119.1|:subseq(20949864,300512)	exonerate:protein2genome:local	exon	150000	150600	.	-	.	insertions 0 ; deletions 1 ; frameshifts 1
gi|357434244|gb|JH378119.1|:subseq(20949864,300512)	exonerate:protein2genome:local	similarity	150000	150600	805	-	.	alignment_id 1 ; Query SPP00000004_1.0 ; Align 150601 3 78 ; Align 150523 30 3 ; Align 150519 31 519
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis