Command line: [exonerate -m p2g --showtargetgff -q ./proteins/SPP00000002_1.0.fa -t ./exonerate/SPP00000002_1.0_1_genomic.fa_exonerate.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete
        Target: gi|357434248|gb|JH378115.1|:subseq(38039391,308705) Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1322
   Query range: 0 -> 265
  Target range: 158705 -> 149999

      1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheS :     20
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheS
 158705 : ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAAATTCTGCCAGTTTTTTTCT : 158648

     21 : erAsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLe :     39
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erAsnCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLe
 158647 : CCAACTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTGCTCAAGCACGTGGTGCT : 158591

     40 : uLeuLeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGlu :     58
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uLeuLeuSerArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGlu
 158590 : GCTGCTGAGCCGCTCCAAGTCCACTCGCGGAGAGTGGCGGCGCATGCTGACCTCAGAG : 158534

     59 : GlyLeuArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln  >>>> Tar :     75
          ||||||||||||||||||||||||||||||||||||||||||||||||          
          GlyLeuArgCysValTrpLysSerPheLeuLeuAspAlaTyrLysGln++        
 158533 : GGACTGCGCTGCGTCTGGAAGAGCTTCCTCCTCGATGCCTACAAACAGgt........ : 158481

     76 : get Intron 1 >>>>  ValLysLeuGlyGluAspAlaProAsnSerSerValVal :     87
           7911 bp           |||||||||||||||||||||||||||||||||||||||
                           ++ValLysLeuGlyGluAspAlaProAsnSerSerValVal
 158480 : .................agGTGAAATTGGGTGAGGATGCCCCCAATTCCAGTGTGGTG : 150536

     88 : HisValSerSerThrGluGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLysIleA :    107
          !.!||||||.!!.!!|||||||||||||||||||||||||||||||||||||||||||
          ArgValSerGlyAlaGluGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLysIleA
 150535 : CGTGTCTCCGGTGCAGAAGGAGGTGACAACAGTGGCAATGGTACCCAGGAGAAGATAG : 150476

    108 : laGluGlyAlaThrCysHisLeuLeuAspPheAlaSerProGluArgProLeuValVa :    126
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          laGluGlyAlaThrCysHisLeuLeuAspPheAlaSerProGluArgProLeuValVa
 150475 : CTGAGGGAGCCACATGTCACCTTCTTGACTTTGCCAGCCCTGAGCGCCCACTGGTGGT : 150419

    127 : lAsnPheGlySerAlaThrUnkProProPheThrSerGlnLeuProAlaPheArgLys :    145
          |||||||||||||||||||   |||||||||||||||||||||||||||||| !!|||
          lAsnPheGlySerAlaThr***ProProPheThrSerGlnLeuProAlaPheCysLys
 150418 : CAACTTTGGCTCAGCTACTTGACCTCCTTTCACGAGCCAGCTGCCAGCCTTCTGCAAA : 150362

    146 : LeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaH :    165
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuValGluGluPheSerSerValAlaAspPheLeuLeuValTyrIleAspGluAlaH
 150361 : CTGGTGGAAGAGTTCTCCTCCGTGGCTGACTTCCTGCTGGTCTACATTGATGAGGCTC : 150302

    166 : isProSerAspGlyTrpAlaIleProGlyAspSerSerLeuSerPheGluValLysLy :    184
          ||||||||||||||||||||||||||||||||||||||! !|||||||||||||||||
          isProSerAspGlyTrpAlaIleProGlyAspSerSerTrpSerPheGluValLysLy
 150301 : ATCCATCAGATGGCTGGGCGATACCTGGGGACTCCTCTTGGTCTTTCGAGGTGAAGAA : 150245

    185 : sHisGlnAsnGlnGluAspArgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSer :    203
          |||||||!:!|||||||||||||||||||||||||||:!!||||||||||||||||||
          sHisGlnSerGlnGluAspArgCysAlaAlaAlaGlnLysLeuLeuGluArgPheSer
 150244 : ACACCAGAGCCAGGAAGATCGATGTGCAGCAGCCCAGAAGCTTCTGGAGCGTTTCTCC : 150188

    204 : LeuProProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnIleAlaT :    223
          |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          LeuProProGlnCysArgValValAlaAspArgMetAspAsnAsnAlaAsnValAlaT
 150187 : TTGCCGCCCCAGTGCCGAGTTGTGGCTGACCGCATGGACAATAACGCCAACGTAGCTT : 150128

    224 : yrGlyValAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGl :    242
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yrGlyValAlaPheGluArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGl
 150127 : ACGGGGTAGCCTTTGAACGTGTGTGCATCGTGCAGAGACAGAAAATTGCTTATCTGGG : 150071

    243 : yGlyLysGlyProPheSerTyrAsnLeuGlnGluValArgHisTrpLeuGluLysAsn :    261
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yGlyLysGlyProPheSerTyrAsnLeuGlnGluValArgHisTrpLeuGluLysAsn
 150070 : AGGAAAGGGCCCCTTCTCCTACAATCTTCAAGAAGTCCGGCATTGGCTGGAGAAGAAT : 150014

    262 : PheSerLysArg :    265
          ||||||||||||
          PheSerLysArg
 150013 : TTCAGCAAGAGA : 150000

vulgar: SPP00000002_1.0 0 265 . gi|357434248|gb|JH378115.1|:subseq(38039391,308705) 158705 149999 - 1322 M 74 222 5 0 2 I 0 7907 3 0 2 M 191 573
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-11-14
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	gene	150000	158705	1322	-	.	gene_id 1 ; sequence SPP00000002_1.0 ; gene_orientation +
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	cds	158484	158705	.	-	.	
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	exon	158484	158705	.	-	.	insertions 0 ; deletions 0
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	splice5	158482	158483	.	-	.	intron_id 1 ; splice_site "GT"
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	intron	150573	158483	.	-	.	intron_id 1
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	splice3	150573	150574	.	-	.	intron_id 0 ; splice_site "AG"
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	cds	150000	150572	.	-	.	
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	exon	150000	150572	.	-	.	insertions 0 ; deletions 0
gi|357434248|gb|JH378115.1|:subseq(38039391,308705)	exonerate:protein2genome:local	similarity	150000	158705	1322	-	.	alignment_id 1 ; Query SPP00000002_1.0 ; Align 158706 1 222 ; Align 150573 75 573
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis