TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP001 fep15 selenoprotein precursor [Danio rerio]
         (138 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic ...    32   5.8  
gb|JH378143.1| Saimiri boliviensis boliviensis unplaced genomic ...    32   7.6  
gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic ...    32   7.6  

>gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00102,
              whole genome shotgun sequence
          Length = 8035806

 Score = 32.0 bits (71), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 98     MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAP 134
              M   EI++L+  LGFY+++    +VP E+   P R P
Sbjct: 639418 MTRAEINALVQELGFYRKAAPDAQVPPEYVWAPSRPP 639528


>gb|JH378143.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00039,
               whole genome shotgun sequence
          Length = 18744880

 Score = 31.6 bits (70), Expect = 7.6
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 105     SLLDSLGFYKRSEKGEEVP-EEFKHFPL 131
               SLLD +G+ K   KGEEVP  +F H+PL
Sbjct: 3128548 SLLDPMGY*KAVAKGEEVPLAKFDHWPL 3128465


>gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001,
                whole genome shotgun sequence
          Length = 72162052

 Score = 31.6 bits (70), Expect = 7.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 98       MKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL 138
                M   EI++L+  L FY++     +VP E+   P R P + L
Sbjct: 58685125 MTRQEINALVQELAFYRKVAPDAQVPPEYMWAPSRPPEETL 58685247


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.315    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 288,896,296
Number of Sequences: 2685
Number of extensions: 2804839
Number of successful extensions: 6229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6126
Number of HSP's gapped (non-prelim): 677
length of query: 138
length of database: 869,524,021
effective HSP length: 113
effective length of query: 25
effective length of database: 869,220,616
effective search space: 21730515400
effective search space used: 21730515400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP002 disulfide bond formation protein A [Ciona intestinalis]
         (214 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic ...    35   2.4  
gb|JH378109.1| Saimiri boliviensis boliviensis unplaced genomic ...    33   7.1  

>gb|JH378111.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00007,
                whole genome shotgun sequence
          Length = 46157118

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 90       YPYTLFGHCALEFAIKKDPSGSIQTQLQESLFKSYFTDGEYPDVETVSTVAATCG 144
                YP+ ++GH    + +    S +I + +Q SL++S+F   EY    T + +A +CG
Sbjct: 32718786 YPFVMYGHLGCFYLLTIKSSDAIDSHVQISLWRSFFISLEY---ITRNGIAGSCG 32718631


>gb|JH378109.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00005,
                whole genome shotgun sequence
          Length = 50794693

 Score = 33.5 bits (75), Expect = 7.1
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -1

Query: 128      GEYPDVETVSTVAATCGLNREEVKSFIS--------DESNLAAVKRKAAQWSANGVSGVP 179
                G Y D   VST +  C  N  E KSFIS        D  +   ++R +AQ+ A+G+S + 
Sbjct: 36662644 GFYLDSNPVSTTS*LCVHNLPEPKSFISKMGVTLL*DCYDTDNIERASAQYLAHGIS*IA 36662465

Query: 180      YFII 183
                 FII
Sbjct: 36662464 IFII 36662453


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,960,868
Number of Sequences: 2685
Number of extensions: 9066011
Number of successful extensions: 38942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 36879
Number of HSP's gapped (non-prelim): 10768
length of query: 214
length of database: 869,524,021
effective HSP length: 125
effective length of query: 89
effective length of database: 869,188,396
effective search space: 77357767244
effective search space used: 77357767244
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|298676538|ref|NP_001177311.1| selenoprotein L [Danio rerio]
         (302 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic ...    38   0.73 
gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic ...    36   2.8  

>gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00152,
               whole genome shotgun sequence
          Length = 4076947

 Score = 37.7 bits (86), Expect = 0.73
 Identities = 32/155 (20%), Positives = 63/155 (40%), Gaps = 8/155 (5%)
 Frame = -1

Query: 156     RHFGULPURDHLTELKN-SKMLLEAQSLRVLVVSYGSLEGATFWLEQTGFEFDMLLDTER 214
               RHF     + ++ +L    K  L+   + ++V+   S      + + TG+  ++ +D ER
Sbjct: 2329492 RHFLCYICKKYVEDLARIPKSFLQEADVTLIVIGQSSYHHIESFCKLTGYSHEIYVDPER 2329313

Query: 215     TVYKMFGL-------GSSMSKVMKFKLMFHYSEIMAMNRTLPEMPPQFIEDLFQMGGDFV 267
                +YK  G+        S  S  +K  L+     + ++ R +      F  D  Q GG  +
Sbjct: 2329312 EIYKRLGMKRGEEIASSGQSPHIKSNLL--SGSLQSLWRAVTGPLFNFQGDPAQQGGTLI 2329139

Query: 268     LEQDGKVIFSYRCKSPVDRPSATQILATVSAHYAH 302
               L     + F  R ++ +D      +L  V   + +
Sbjct: 2329138 LGPGNNIHFIDRDRNRLDHKPINSVLQLVGVQHVN 2329034

>gb|JH378113.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00009,
                whole genome shotgun sequence
          Length = 44311105

 Score = 35.8 bits (81), Expect = 2.8
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -1

Query: 14       KELTIFGRTSLEYVEKDTANGCTLQEVNGKVLPLLGLMSAGAKFCNSLGVKNQKEAESLW 73
                KE T+  +T+L++  ++  + C        VLP++  M        S GV  +     LW
Sbjct: 31236232 KEKTVVAKTALQFCARNLGHWCFRHRRESPVLPIVKTMGKVQYLSQSAGVSGKVPNGFLW 31236053

Query: 74       ERFFQ-NTEVRESVEGL-LQLEVEWDRFLKRLDV 105
                    Q N  +  S+E L L L VEW    K  D+
Sbjct: 31236052 LNVSQLNLSLARSLE*LTLTLTVEWRLDWKESDL 31235951

  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.319    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 753,164,692
Number of Sequences: 2685
Number of extensions: 9168052
Number of successful extensions: 31204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 29952
Number of HSP's gapped (non-prelim): 5861
length of query: 302
length of database: 869,524,021
effective HSP length: 130
effective length of query: 172
effective length of database: 869,174,971
effective search space: 149498095012
effective search space used: 149498095012
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)
TBLASTN 2.2.13 [Nov-27-2005]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|301500661|ref|NP_001180398.1| selenoprotein J [Danio rerio]
         (342 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378300.1| Saimiri boliviensis boliviensis unplaced genomic ...    36   3.4  
gb|JH378258.1| Saimiri boliviensis boliviensis unplaced genomic ...    35   4.4  
gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic ...    35   5.8  

>gb|JH378300.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00196,
               whole genome shotgun sequence
          Length = 1944256

 Score = 35.8 bits (81), Expect = 3.4
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 130     SLKGFIKNVDAGKEETGCETDTQIDGVTKLAPIV--ACYAGKPEMLEKVEEAVRVTQNND 187
               ++ G  +  + GK  T C+T     GV +L   +  AC A   E  E +E   + + N +
Sbjct: 1156011 AVAGLCRMREKGKTNTWCQTS*LASGVVQLTAKLRRACRAVSLERKENLECIAKGSSNLN 1156190

Query: 188     LCVAETLAAARFLEHFILNGPDPKALDA 215
                C+        F++      PDPK++ A
Sbjct: 1156191 FCLVWMKRQMSFVQSLFYVNPDPKSVSA 1156274

>gb|JH378258.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00154,
               whole genome shotgun sequence
          Length = 4032439

 Score = 35.4 bits (80), Expect = 4.4
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -3

Query: 96      FGPGSEYDTPVNDPYRDKGAPRPQLPIEGPWRHASLKGFIKNVDAGKEETGCETDTQIDG 155
               + PGS   +P   P +   AP P +P  G W+      F+ +   G +E GCE   Q+ G
Sbjct: 2692019 WAPGSRVRSPAVGPGQ---APPPVVPQLGFWKSEEKNSFLLHGALG*KEEGCEARLQMPG 2691849

Query: 156     VTKLAP 161
                + L P
Sbjct: 2691848 RSHLRP 2691831

>gb|JH378116.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00012,
                whole genome shotgun sequence
          Length = 39782659

 Score = 35.0 bits (79), Expect = 5.8
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 105      PVNDPYRDKGAPRPQLPIEGPWRHASLKG--FIKNVDAGKEETGC 147
                PV  P     + +PQ PI  PW HA+ KG  F  N D G+    C
Sbjct: 38416031 PVPGPRPPTASHQPQWPIINPWSHAAFKGSSFSPNTDRGRTACLC 38415897

  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.317    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,038,424,391
Number of Sequences: 2685
Number of extensions: 16830132
Number of successful extensions: 64671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 58046
Number of HSP's gapped (non-prelim): 21919
length of query: 342
length of database: 869,524,021
effective HSP length: 131
effective length of query: 211
effective length of database: 869,172,286
effective search space: 183395352346
effective search space used: 183395352346
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)