TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo
sapiens # Complete
         (115 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378271.1| Saimiri boliviensis boliviensis unplaced genomic ...    71   1e-17

>gb|JH378271.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00167,
               whole genome shotgun sequence
          Length = 3513951

 Score = 70.9 bits (172), Expect(2) = 1e-17
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 31      EPCGFEATYLELASAVKEQYPGIEIESRLGGTG 63
               EPCGFEATYLELASAVKEQYPGIEIESRLGGTG
Sbjct: 3225726 EPCGFEATYLELASAVKEQYPGIEIESRLGGTG 3225824



 Score = 57.8 bits (138), Expect(2) = 1e-17
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +2

Query: 63      GAFEIEINGQLVFSKLENGGFPYEKDL 89
               GAFEIEINGQLVFSKLENGGFPYEKD+
Sbjct: 3226274 GAFEIEINGQLVFSKLENGGFPYEKDV 3226354



 Score = 53.5 bits (127), Expect(2) = 1e-17
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +3

Query: 89      LIEAIRRASNGETLEKITNSRPPCVIL 115
               LIEAIRRASNGE LEKITNSRPPC+IL
Sbjct: 3226434 LIEAIRRASNGEPLEKITNSRPPCIIL 3226514



 Score = 40.4 bits (93), Expect(2) = 1e-17
 Identities = 20/29 (68%), Positives = 21/29 (72%)
 Frame = +1

Query: 1       MSGEPGQTSVAXXXXXXXXGSGVRIVVEY 29
               M+GEPGQTSVA        GSGVRIVVEY
Sbjct: 3225523 MNGEPGQTSVAPLPGKVEPGSGVRIVVEY 3225609


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.314    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,282,586
Number of Sequences: 2685
Number of extensions: 2909596
Number of successful extensions: 4959
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4830
Number of HSP's gapped (non-prelim): 567
length of query: 115
length of database: 869,524,021
effective HSP length: 90
effective length of query: 25
effective length of database: 869,282,371
effective search space: 21732059275
effective search space used: 21732059275
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 104 (44.7 bits)