TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo
sapiens # Complete
         (87 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378198.1| Saimiri boliviensis boliviensis unplaced genomic ...    75   5e-13
gb|JH378232.1| Saimiri boliviensis boliviensis unplaced genomic ...    54   1e-06
gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic ...    47   2e-04

>gb|JH378198.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00094,
               whole genome shotgun sequence
          Length = 8833755

 Score = 75.5 bits (184), Expect = 5e-13
 Identities = 37/41 (90%), Positives = 37/41 (90%)
 Frame = +3

Query: 31      PGRLDICGEGTPQATGFFEVMVAGKLIHSKKKGDGYVDTES 71
               PG LDI GEGTP  TGFFEVMVAGKLIHSKKKGDGYVDTES
Sbjct: 6458628 PGCLDIGGEGTP*DTGFFEVMVAGKLIHSKKKGDGYVDTES 6458750


>gb|JH378232.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00128,
               whole genome shotgun sequence
          Length = 6141190

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 35/77 (45%), Positives = 36/77 (46%), Gaps = 34/77 (44%)
 Frame = +2

Query: 29      EFPGRLDICGEGTPQATGFFEVMVAGKLIHSKK--------------------------- 61
               + P  L   GEGTPQATGFFEV VAGKLIHSKK                           
Sbjct: 3027653 QHPLSLPQSGEGTPQATGFFEVTVAGKLIHSKKVCLSVLPRFGASVGCS*GWCLSPSSSL 3027832

Query: 62      -------KGDGYVDTES 71
                      KGDGYVDTES
Sbjct: 3027833 LSSSPS*KGDGYVDTES 3027883


>gb|JH378139.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00035,
               whole genome shotgun sequence
          Length = 19873202

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 24/51 (47%), Positives = 27/51 (52%)
 Frame = +2

Query: 2       ALAVRVVYCGAXGXXXXXXXXXXXXEDEFPGRLDICGEGTPQATGFFEVMV 52
               AL  +V+YCG  G            EDE    LDIC  G+PQ T FFEVMV
Sbjct: 4491761 ALVFQVIYCGT*G*KSKYFQLKKKLEDELSRCLDICSNGSPQVTKFFEVMV 4491913


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.318    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,664,737
Number of Sequences: 2685
Number of extensions: 1389568
Number of successful extensions: 2948
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2900
Number of HSP's gapped (non-prelim): 126
length of query: 87
length of database: 869,524,021
effective HSP length: 62
effective length of query: 25
effective length of database: 869,357,551
effective search space: 21733938775
effective search space used: 21733938775
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)