TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
         (198 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378221.1| Saimiri boliviensis boliviensis unplaced genomic ...    91   4e-17
gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic ...    48   2e-04

>gb|JH378221.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00117,
               whole genome shotgun sequence
          Length = 6876325

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 45/54 (83%), Positives = 48/54 (88%)
 Frame = -2

Query: 36      VAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFAG 89
               VAGLRRFGC VC  IA+DL SLAGLL+Q GVRLVGVGP+ALGLQEFLDG YFAG
Sbjct: 5316582 VAGLRRFGCGVCG*IARDLGSLAGLLEQPGVRLVGVGPQALGLQEFLDGGYFAG 5316421



 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 31/33 (93%), Positives = 31/33 (93%)
 Frame = -2

Query: 161     HFVQKSPGDYVPKEHILQVLGISAEVCASDPPQ 193
               HFVQKSPGDYVP EHILQVLGISAEVCAS PPQ
Sbjct: 5312949 HFVQKSPGDYVPWEHILQVLGISAEVCASGPPQ 5312851


>gb|JH378256.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00152,
               whole genome shotgun sequence
          Length = 4076947

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = -1

Query: 21      EAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLA-GLLDQHGVRLVGVGPEALG-L 78
               + V   +L+RE   VV  +R F C +C+   +DL+ +    L +  V L+ +G  +   +
Sbjct: 2329549 QQVPFGALFRERRTVVVFMRHFLCYICKKYVEDLARIPKSFLQEADVTLIVIGQSSYHHI 2329370

Query: 79      QEFLDGDYFAGELYLDESKQLYKELGFKR 107
               + F     ++ E+Y+D  +++YK LG KR
Sbjct: 2329369 ESFCKLTGYSHEIYVDPEREIYKRLGMKR 2329283


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.322    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,581,819
Number of Sequences: 2685
Number of extensions: 7772226
Number of successful extensions: 26086
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 24753
Number of HSP's gapped (non-prelim): 5182
length of query: 198
length of database: 869,524,021
effective HSP length: 124
effective length of query: 74
effective length of database: 869,191,081
effective search space: 64320139994
effective search space used: 64320139994
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)