TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete
         (229 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378130.1| Saimiri boliviensis boliviensis unplaced genomic ...   107   4e-33
gb|JH378266.1| Saimiri boliviensis boliviensis unplaced genomic ...   126   9e-28

>gb|JH378130.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00026,
               whole genome shotgun sequence
          Length = 24403887

 Score =  107 bits (267), Expect(2) = 4e-33
 Identities = 73/168 (43%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
 Frame = -2

Query: 65      KAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDF 124
               K +   EKNGAVI+A   PGC L +E+ ADL SLK  LD+L   LY VV E IRT++K F
Sbjct: 9567044 KQRSYGEKNGAVIVA--EPGCLL*QEDTADLFSLKLKLDELDFLLYTVVNEQIRTDIKIF 9566871

Query: 125     QPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLE---GEGFIL 181
               QP FK EIFL   K FY   R+K++FMGF  L VWYN+ +    G    LE    E    
Sbjct: 9566870 QPCFKREIFLHANKTFYDL*RQKILFMGFSPLRVWYNYIQP---GIKAPLETWNNEASFS 9566700

Query: 182     GGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229
               G  F      +G  L   +K    K       +     KP+T ASEKK
Sbjct: 9566699 GEFFQWDQ*SRG-FLSTEKKNMATK*THFLFWKLLGRPKPETSASEKK 9566559



 Score = 57.8 bits (138), Expect(2) = 4e-33
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = -1

Query: 33      NTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELW 70
               +TDVFLSKP K  LEYLE+ DLKT EK P  FKAKELW
Sbjct: 9567141 STDVFLSKPWKEVLEYLENTDLKTREK*PAIFKAKELW 9567028


>gb|JH378266.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00162,
              whole genome shotgun sequence
          Length = 3778282

 Score =  126 bits (316), Expect = 9e-28
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = +2

Query: 130    GEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGS 189
              G +FL   KKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGF+LGGVFVVGS
Sbjct: 198110 GSVFLTP*KKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFVLGGVFVVGS 198289

Query: 190    GKQ 192
              GKQ
Sbjct: 198290 GKQ 198298



 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 46/57 (80%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
 Frame = +2

Query: 87     LCR-EEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEKKKFYG 142
              LC  +EAADLSSLK  LD+LGVPLYAVVKEHI+TEVKDFQPYFKGEIFLDEK +  G
Sbjct: 196646 LCHPQEAADLSSLKPKLDELGVPLYAVVKEHIKTEVKDFQPYFKGEIFLDEKVRVLG 196816



 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 50/88 (56%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
 Frame = +2

Query: 1      MSFLQDPSFFTMGMWSIXXXXXXXXXXXXXXXNTDVFLSKPQKAALEYLEDIDLKTLEKE 60
              MSFLQDPSFFTMGMWSI               NTD+FLSKPQKAALEYLEDIDL TLEK 
Sbjct: 190982 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDMFLSKPQKAALEYLEDIDLNTLEKG 191161

Query: 61     PR-TFKAKELWEKNGAVIMAVRRPGCFL 87
                  F+++   E+ G      RR  CFL
Sbjct: 191162 KW*PFRSQYFLEELG-----YRRTYCFL 191230



 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 36/37 (97%), Positives = 37/37 (100%)
 Frame = +2

Query: 193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229
              G+LLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
Sbjct: 201833 GVLLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 201943



 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = +1

Query: 60     EPRTFKAKELWEKNGAVIMAVRRPGCFLCREEAAD 94
              EPRT KAKELWEKNGAVIMAVRRPGCFLCRE +AD
Sbjct: 193234 EPRTLKAKELWEKNGAVIMAVRRPGCFLCREVSAD 193338


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.322    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,236,409
Number of Sequences: 2685
Number of extensions: 9099365
Number of successful extensions: 26335
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 24895
Number of HSP's gapped (non-prelim): 7044
length of query: 229
length of database: 869,524,021
effective HSP length: 126
effective length of query: 103
effective length of database: 869,185,711
effective search space: 89526128233
effective search space used: 89526128233
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)