TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378123.1| Saimiri boliviensis boliviensis unplaced genomic ...   111   2e-23
gb|JH378144.1| Saimiri boliviensis boliviensis unplaced genomic ...    55   1e-06

>gb|JH378123.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00019,
               whole genome shotgun sequence
          Length = 29834108

 Score =  111 bits (277), Expect = 2e-23
 Identities = 54/57 (94%), Positives = 54/57 (94%), Gaps = 1/57 (1%)
 Frame = +2

Query: 137     QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSG-TAEGGSGVASPAQADKAEL 192
               QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADS G  AEGGSGVASPAQADKAEL
Sbjct: 8369180 QCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSGGAAAEGGSGVASPAQADKAEL 8369350



 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
 Frame = +2

Query: 78      HKDPGIYKCVVCGTPLFKSETKFDS----GSGWPSFHDVINSEAITFTDDFSYGMHRVET 133
               H +P +Y   +C          FDS      GWPSFHDVI+SEAITFTDDFSYGMHRVET
Sbjct: 8360285 HSNPRLYISPLC----------FDSCACCSPGWPSFHDVISSEAITFTDDFSYGMHRVET 8360434

Query: 134     SCSQ 137
               SCSQ
Sbjct: 8360435 SCSQ 8360446



 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +1

Query: 36      RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 68
               RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE
Sbjct: 8244250 RDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE 8244348



 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 69      SAFEGEYTHHKDPGIYKCVVCGTPLFK 95
               SAFEGEYTHHKDPGIYKCVVCGTPLFK
Sbjct: 8245947 SAFEGEYTHHKDPGIYKCVVCGTPLFK 8246027


>gb|JH378144.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00040,
                whole genome shotgun sequence
          Length = 18451090

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 137      QCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
                QC AHLGH+F DGP P G+R+CINS AL F P
Sbjct: 14815999 QCEAHLGHVFPDGPGPNGQRFCINSVALKFKP 14816094


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,544,188
Number of Sequences: 2685
Number of extensions: 8749096
Number of successful extensions: 31106
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 28839
Number of HSP's gapped (non-prelim): 8051
length of query: 192
length of database: 869,524,021
effective HSP length: 123
effective length of query: 69
effective length of database: 869,193,766
effective search space: 59974369854
effective search space used: 59974369854
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)