TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000020_1.0 # Protein # Selenoprotein P (SelP) # Homo
sapiens # Complete
         (381 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...   227   9e-58

>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score =  227 bits (578), Expect = 9e-58
 Identities = 129/203 (63%), Positives = 136/203 (66%)
 Frame = +1

Query: 179      TLKDEDFCKRVSLATVDKTVETPSPXXXXXXXXXXXXXXLGSSELSENQQPGAPNXXXXX 238
                TLKDEDFCK VSLATV+KT E P P              LGSSELS+N+QPGAP+     
Sbjct: 25012372 TLKDEDFCKNVSLATVNKTTEAPQPHHHHKHHHNHGHQHLGSSELSKNEQPGAPDAPTHL 25012551

Query: 239      XXXXXXXXXXXXXXXXXXXXENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPR 298
                                    EN  MP SE LQ  Q KL +KRCINQLL KLP DSELAPR
Sbjct: 25012552 TSPDLHHHHKHKGQHRQGHPEN*YMPGSEGLQHPQNKL*QKRCINQLL*KLPKDSELAPR 25012731

Query: 299      SXCCHCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQXRLPPAAXQISQQL 358
                S C HCRHLIFEKTGSAIT QCKENLPSLCS QGLRAEE ITESCQ RLPPAA Q SQQL
Sbjct: 25012732 S*C*HCRHLIFEKTGSAIT*QCKENLPSLCS*QGLRAEETITESCQ*RLPPAA*QTSQQL 25012911

Query: 359      IPTEASASXRXKNQAKKXEXPSN 381
                IPTEAS +   KN+AKK E PSN
Sbjct: 25012912 IPTEASTN*S*KNKAKK*E*PSN 25012980



 Score =  138 bits (347), Expect = 6e-31
 Identities = 64/82 (78%), Positives = 75/82 (91%)
 Frame = +2

Query: 58       SXYLCILQASKLEDLRVKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQE 117
                S Y+ + +  +LEDLRVKL+KEGYSNISYI+VNHQG+SS+L+YTHLKN+VSEHIPVYQQE
Sbjct: 25006889 SFYMFLPKYFRLEDLRVKLEKEGYSNISYIIVNHQGLSSQLRYTHLKNQVSEHIPVYQQE 25007068

Query: 118      ENQTDVWTLLNGSKDDFLIYDR 139
                ENQ DVW LLNG+KDDFLIYDR
Sbjct: 25007069 ENQPDVWALLNGNKDDFLIYDR 25007134



 Score =  110 bits (276), Expect = 1e-22
 Identities = 55/74 (74%), Positives = 61/74 (82%)
 Frame = +2

Query: 1        MWRSXXXXXXXXXXPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASXY 60
                MWRS          P+GGTESQDQSSLCKQPPAW+IRDQDPMLNS+GSVTVVALLQAS Y
Sbjct: 25005656 MWRSLGLALALCLLPAGGTESQDQSSLCKQPPAWNIRDQDPMLNSSGSVTVVALLQAS*Y 25005835

Query: 61       LCILQASKLEDLRV 74
                LCILQAS+ ++L V
Sbjct: 25005836 LCILQASR*DNLSV 25005877



 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 41/45 (91%), Positives = 44/45 (97%)
 Frame = +3

Query: 134      FLIYDRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT 178
                F+++ RCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT
Sbjct: 25009239 FVLFLRCGRLVYHLGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT 25009373


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.315    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,132,278,769
Number of Sequences: 2685
Number of extensions: 17216666
Number of successful extensions: 77802
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 71178
Number of HSP's gapped (non-prelim): 25052
length of query: 381
length of database: 869,524,021
effective HSP length: 132
effective length of query: 249
effective length of database: 869,169,601
effective search space: 216423230649
effective search space used: 216423230649
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)