TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000019_1.0 # Protein # Selenoprotein O (SelO) # Homo
sapiens # Complete
         (669 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378157.1| Saimiri boliviensis boliviensis unplaced genomic ...   155   2e-63

>gb|JH378157.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00053,
               whole genome shotgun sequence
          Length = 16357246

 Score =  155 bits (393), Expect = 6e-36
 Identities = 76/103 (73%), Positives = 80/103 (77%)
 Frame = +2

Query: 349     YGPFGFLDRYDPDHVCNASDNTGRYAYSKQPEVCRWNLRKXXXXXXXXXXXXXXXXILAE 408
               +G      RYDPDHVCNASDNTGRYAYSKQPEVC+WNL+K                ILAE
Sbjct: 6490412 HGCLALCGRYDPDHVCNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAE 6490591

Query: 409     EFDAEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLTG 451
               EFD EFQRHYLQKMRRKLGLVQVELEEDGALVSKLL+TMHLTG
Sbjct: 6490592 EFDTEFQRHYLQKMRRKLGLVQVELEEDGALVSKLLQTMHLTG 6490720



 Score =  137 bits (344), Expect = 3e-30
 Identities = 65/69 (94%), Positives = 68/69 (98%)
 Frame = +3

Query: 185     RQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVV 244
               RQADGRKVLRSSIREFLCSEAMFHLG+PTTRAGACVTSESTV RDVFYDGNPKYE+CTVV
Sbjct: 6486537 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVARDVFYDGNPKYEKCTVV 6486716

Query: 245     LRVASTFIR 253
               LR+ASTFIR
Sbjct: 6486717 LRIASTFIR 6486743



 Score =  125 bits (315), Expect = 6e-27
 Identities = 57/60 (95%), Positives = 57/60 (95%)
 Frame = +3

Query: 128     ALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSRQA 187
               ALLPGAEPAAHCYCGHQFG FAGQLGDGAAMYLGEVCTA GERWELQLKGAGPTPFSR A
Sbjct: 6482340 ALLPGAEPAAHCYCGHQFGHFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRWA 6482519



 Score =  121 bits (303), Expect(3) = 2e-63
 Identities = 64/77 (83%), Positives = 68/77 (88%), Gaps = 1/77 (1%)
 Frame = +3

Query: 488     EELRLAFRPQMDP-RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 546
               E+ R+A +    P RQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQS+LEQLSAAE
Sbjct: 6495480 EQSRVASQTPRPPCRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSQLEQLSAAE 6495659

Query: 547     LQSRNQGHWADWLQAYR 563
               LQSRNQ HWA WLQAYR
Sbjct: 6495660 LQSRNQDHWATWLQAYR 6495710



 Score =  120 bits (302), Expect = 2e-25
 Identities = 59/63 (93%), Positives = 63/63 (100%)
 Frame = +3

Query: 253     RFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFR 312
               RFGSFEIFKSADEH+GRAGPSVGR+DIRVQLL+YVISSFYPEIQAAHASDSVQRNAAFFR
Sbjct: 6488427 RFGSFEIFKSADEHSGRAGPSVGRSDIRVQLLNYVISSFYPEIQAAHASDSVQRNAAFFR 6488606

Query: 313     EVT 315
               EV+
Sbjct: 6488607 EVS 6488615



 Score =  102 bits (255), Expect(3) = 2e-63
 Identities = 52/60 (86%), Positives = 53/60 (88%)
 Frame = +2

Query: 563     RARLDKDLEGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSEVRRVLKL 622
               RARLDKDLEGAGDAAAWQAE VRVM A+NPKYVLRNYIAQNAIEAAERGDFSE    L L
Sbjct: 6495782 RARLDKDLEGAGDAAAWQAERVRVMRASNPKYVLRNYIAQNAIEAAERGDFSEAST*LTL 6495961



 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = +2

Query: 313     EVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR 357
               +VTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR
Sbjct: 6490028 QVTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDR 6490162



 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 48/51 (94%), Positives = 49/51 (96%)
 Frame = +2

Query: 451     GADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR 501
               GADFTNTFYLLSSF V+ ESPGLAEFLARLMEQCASLEELRLAFRPQMDPR
Sbjct: 6494435 GADFTNTFYLLSSFLVDPESPGLAEFLARLMEQCASLEELRLAFRPQMDPR 6494587



 Score = 66.2 bits (160), Expect(3) = 2e-63
 Identities = 34/55 (61%), Positives = 35/55 (63%)
 Frame = +3

Query: 615     EVRRVLKLLETPYHCXXXXXXXXXXXXXXXXXXRQRSYSSKPPLWAAELCVTXSS 669
               +VRRVLKLLETPYHC                   QRSYSSKPPLWAAELCVT SS
Sbjct: 6496014 QVRRVLKLLETPYHCEAGAATEPEATEARGATGGQRSYSSKPPLWAAELCVT*SS 6496178


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,787,124,675
Number of Sequences: 2685
Number of extensions: 24225160
Number of successful extensions: 91711
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 87393
Number of HSP's gapped (non-prelim): 15359
length of query: 669
length of database: 869,524,021
effective HSP length: 138
effective length of query: 531
effective length of database: 869,153,491
effective search space: 461520503721
effective search space used: 461520503721
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)