TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000017_1.0 # Protein # Selenoprotein M (SelM) # Homo
sapiens # Complete
         (145 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic ...   107   4e-45
gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic ...   103   7e-33

>gb|JH378105.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00001,
                whole genome shotgun sequence
          Length = 72162052

 Score =  107 bits (267), Expect(2) = 4e-45
 Identities = 51/59 (86%), Positives = 54/59 (91%)
 Frame = +2

Query: 29       PDWNRLSGLTRARVETCGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGR 87
                PDWNRL GL+R RVETCGG QLNRLKE+KAFVTQDIPF HNLVMKHLPGADP+LVLL R
Sbjct: 58684805 PDWNRLRGLSRGRVETCGG*QLNRLKEMKAFVTQDIPFCHNLVMKHLPGADPKLVLLLR 58684981



 Score = 96.3 bits (238), Expect(2) = 4e-45
 Identities = 44/54 (81%), Positives = 49/54 (90%)
 Frame = +1

Query: 92       LERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL 145
                L+ I LSEMTR+EINALVQEL FYRK APDAQVPPEY+WAP++PPEET DHADL
Sbjct: 58685101 LQHILLSEMTRQEINALVQELAFYRKVAPDAQVPPEYMWAPSRPPEETLDHADL 58685262


>gb|JH378206.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00102,
              whole genome shotgun sequence
          Length = 8035806

 Score =  103 bits (258), Expect(2) = 7e-33
 Identities = 48/53 (90%), Positives = 51/53 (96%)
 Frame = +1

Query: 93     ERIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPAKPPEETSDHADL 145
              +RIPLSEMTR EINALVQELGFYRKAAPDAQVPPEYVWAP++PPE TSDHADL
Sbjct: 639397 QRIPLSEMTRAEINALVQELGFYRKAAPDAQVPPEYVWAPSRPPEGTSDHADL 639555



 Score = 58.5 bits (140), Expect(2) = 7e-33
 Identities = 35/72 (48%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
 Frame = +3

Query: 29     PDWNRLSGLTRARVET----CGGXQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVL 84
              P W+R+S   R +  +    CG   L          T      HNLVMKHLPGADPELVL
Sbjct: 639126 PSWHRVSAQQRRKCCSHK*GCGNPHLPLPTTAHLNTTSS----HNLVMKHLPGADPELVL 639293

Query: 85     LGRRYEELERIP 96
              LGRR+EELE  P
Sbjct: 639294 LGRRHEELEVRP 639329


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.317    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,419,115
Number of Sequences: 2685
Number of extensions: 4192297
Number of successful extensions: 17566
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 16543
Number of HSP's gapped (non-prelim): 4266
length of query: 145
length of database: 869,524,021
effective HSP length: 117
effective length of query: 28
effective length of database: 869,209,876
effective search space: 24337876528
effective search space used: 24337876528
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)