TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378142.1| Saimiri boliviensis boliviensis unplaced genomic ...   103   2e-21
gb|JH378192.1| Saimiri boliviensis boliviensis unplaced genomic ...    96   3e-19
gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic ...    92   6e-18
gb|JH378169.1| Saimiri boliviensis boliviensis unplaced genomic ...    90   2e-17
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...    72   5e-12
gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...    66   3e-10
gb|JH378208.1| Saimiri boliviensis boliviensis unplaced genomic ...    64   1e-09
gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic ...    62   5e-09
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    47   2e-04

>gb|JH378142.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00038,
                whole genome shotgun sequence
          Length = 19171412

 Score =  103 bits (256), Expect = 2e-21
 Identities = 54/64 (84%), Positives = 56/64 (87%), Gaps = 2/64 (3%)
 Frame = +1

Query: 1        MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDV--KKRRSYGNSSDS 58
                MV ISN  VLDSRSQSPWRLSLIT+FFWGIAEFVV FFK LLQQDV  KK+RSYGNSSDS
Sbjct: 18512071 MVSISN*LVLDSRSQSPWRLSLITNFFWGIAEFVVSFFKALLQQDVKKKKKRSYGNSSDS 18512250

Query: 59       RYDD 62
                RY D
Sbjct: 18512251 RYAD 18512262


>gb|JH378192.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00088,
               whole genome shotgun sequence
          Length = 9397244

 Score = 96.3 bits (238), Expect = 3e-19
 Identities = 51/80 (63%), Positives = 55/80 (68%)
 Frame = -1

Query: 1       MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60
               + YI N  +LDSR+QS WRL LITDFFWGIAE VVLFFKTLLQQDV+K  SYGNSSDS Y
Sbjct: 1804871 ITYI*NEHMLDSRNQSSWRLFLITDFFWGIAECVVLFFKTLLQQDVEKISSYGNSSDSGY 1804692

Query: 61      DDXXXXXXXXXXXXXXINHL 80
               D               INHL
Sbjct: 1804691 DGGSGPPGNPP*RMGRINHL 1804632


>gb|JH378160.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00056,
                whole genome shotgun sequence
          Length = 15574059

 Score = 91.7 bits (226), Expect = 6e-18
 Identities = 43/50 (86%), Positives = 46/50 (92%)
 Frame = +3

Query: 1        MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRR 50
                M YIS GQVLDSR+QSPWRLSLITDF WGIAEFVVLFFKTL QQDVKK++
Sbjct: 11095980 MAYISKGQVLDSRNQSPWRLSLITDFSWGIAEFVVLFFKTLFQQDVKKKK 11096129


>gb|JH378169.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00065,
               whole genome shotgun sequence
          Length = 12923763

 Score = 89.7 bits (221), Expect = 2e-17
 Identities = 49/80 (61%), Positives = 54/80 (67%)
 Frame = +2

Query: 1       MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRY 60
               MVYI NGQVLDS+S SPWRLSLITDFFWGI  F+VLFFKT   +  + RRSYGNS DSR 
Sbjct: 5319374 MVYILNGQVLDSQS*SPWRLSLITDFFWGIG*FMVLFFKTASAR-YENRRSYGNSPDSR* 5319550

Query: 61      DDXXXXXXXXXXXXXXINHL 80
               DD              I+HL
Sbjct: 5319551 DDGRGPLGNLPQRMGRISHL 5319610


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score = 72.0 bits (175), Expect = 5e-12
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = -2

Query: 1        MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYG 53
                MV ISN QVLDS+S+SPWRLSLITDFFWGIAEFVVL F  L    + K+ + G
Sbjct: 14932580 MVSISNKQVLDSQSESPWRLSLITDFFWGIAEFVVLCFSKLCFSKM*KKEAVG 14932422


>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score = 66.2 bits (160), Expect = 3e-10
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +2

Query: 3       YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL 36
               ++S GQVLDSR+QSPWRLSLITDFFWGIAEFVVL
Sbjct: 4446395 FLSVGQVLDSRNQSPWRLSLITDFFWGIAEFVVL 4446496



 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +2

Query: 38      FKTLLQQDVKKRRSYGNSSDSRYDD 62
               FKTLLQQDVKKRRSYGNSSDSRYDD
Sbjct: 4447958 FKTLLQQDVKKRRSYGNSSDSRYDD 4448032


>gb|JH378208.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00104,
               whole genome shotgun sequence
          Length = 7843285

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 39/68 (57%), Positives = 44/68 (64%)
 Frame = -3

Query: 13      RSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDDXXXXXXXXXX 72
               +S SP +LSLITDFF  IA+FVVLF KTLLQQ VKK R   NSSDSRYD+          
Sbjct: 1594421 QSSSP*KLSLITDFF*RIAKFVVLFLKTLLQQHVKK-RG*ENSSDSRYDNGRWPPGSPPG 1594245

Query: 73      XXXXINHL 80
                   I+HL
Sbjct: 1594244 KTGQISHL 1594221


>gb|JH378154.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00050,
                whole genome shotgun sequence
          Length = 16452072

 Score = 62.0 bits (149), Expect = 5e-09
 Identities = 30/49 (61%), Positives = 35/49 (71%)
 Frame = -2

Query: 2        VYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRR 50
                VY+ NGQVLDS SQSPWRLS ITDFFW IAEFV   F+       +K++
Sbjct: 11257070 VYLPNGQVLDSWSQSPWRLSWITDFFWRIAEFVDFAFENSASARCEKKQ 11256924



 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = -3

Query: 35       VLFFKTLLQQDVKKRRSYGNSSDSRYDD 62
                +L  KTLLQ+DVKK  SYGNSSDSRYDD
Sbjct: 11256970 ILLLKTLLQRDVKKSSSYGNSSDSRYDD 11256887


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
               whole genome shotgun sequence
          Length = 7396992

 Score = 46.6 bits (109), Expect = 2e-04
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = -3

Query: 20      LSLITDFFWGIAEFVVLFFKTLLQQDVKKRR 50
               LSLITD F GIAEFVVLFFKTLLQQ   K++
Sbjct: 7096126 LSLITDIFSGIAEFVVLFFKTLLQQRRGKKK 7096034


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,494,133
Number of Sequences: 2685
Number of extensions: 2121504
Number of successful extensions: 13345
Number of sequences better than 1.0e-03: 9
Number of HSP's better than  0.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 12729
Number of HSP's gapped (non-prelim): 2808
length of query: 94
length of database: 869,524,021
effective HSP length: 69
effective length of query: 25
effective length of database: 869,338,756
effective search space: 21733468900
effective search space used: 21733468900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)