TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo
sapiens # Complete
         (124 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic ...    91   8e-18

>gb|JH378282.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00178,
               whole genome shotgun sequence
          Length = 3135667

 Score = 91.3 bits (225), Expect = 8e-18
 Identities = 44/61 (72%), Positives = 46/61 (75%)
 Frame = +1

Query: 30      SAFGAEFSSEACRELGFXXXXXXXXXXXXGQFNLLQLDPDCRGCCQEEAQFETKKLYAGA 89
               SAFGAEFSSEACRELGF            GQFNLLQLDPDCRGCCQEEAQFETKK+   +
Sbjct: 2844004 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKKVLFSS 2844183

Query: 90      I 90
               I
Sbjct: 2844184 I 2844186



 Score = 45.8 bits (107), Expect = 4e-04
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = +1

Query: 1       MVAMAAGPSGCLVPAFGLRLLLATVLQAVSA 31
               +VAMAAGP G L+PAF LRLL AT+LQ VSA
Sbjct: 2833177 VVAMAAGPGGWLLPAFQLRLLFATLLQVVSA 2833269


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.329    0.142    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,013,192
Number of Sequences: 2685
Number of extensions: 5241022
Number of successful extensions: 30866
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 29414
Number of HSP's gapped (non-prelim): 5579
length of query: 124
length of database: 869,524,021
effective HSP length: 99
effective length of query: 25
effective length of database: 869,258,206
effective search space: 21731455150
effective search space used: 21731455150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)