TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000011_1.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Homo sapiens # Complete
         (209 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...   179   1e-43
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...   115   1e-24
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...   110   4e-23
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...    68   3e-10
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...    62   2e-08
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   7e-05
gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic ...    47   4e-04

>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score =  179 bits (453), Expect = 1e-43
 Identities = 86/88 (97%), Positives = 87/88 (98%)
 Frame = -3

Query: 68       KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127
                +VSLVVNVASDCQLTDRNYL LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR
Sbjct: 17410624 EVSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 17410445

Query: 128      KNYGVTFPIFHKIKILGSEGEPAFRFLV 155
                KNYGVTFPIFHKIKILGSEGEPAFRFLV
Sbjct: 17410444 KNYGVTFPIFHKIKILGSEGEPAFRFLV 17410361



 Score =  114 bits (284), Expect = 4e-24
 Identities = 51/56 (91%), Positives = 56/56 (100%)
 Frame = -1

Query: 154      LVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209
                ++DSSKKEPRWNFWKYLVNPEGQVVKFW+PEEPIEVIRPDIAALVRQ+II+KKEDL
Sbjct: 17407767 ILDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQLIIRKKEDL 17407600



 Score =  110 bits (276), Expect = 3e-23
 Identities = 57/73 (78%), Positives = 59/73 (80%)
 Frame = -3

Query: 1        MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTXXXXXXXXXXPKINSFYAFEVKDAKGRTV 60
                MEPLAAYPLK SGPRAKVFAVLLS+VLCTVT          PKINSFYAFEVKDAKGR V
Sbjct: 17411425 MEPLAAYPLKYSGPRAKVFAVLLSMVLCTVTLLLLQLKFLKPKINSFYAFEVKDAKGRPV 17411246

Query: 61       SLEKYKGKVSLVV 73
                SLEKYKGKVS  +
Sbjct: 17411245 SLEKYKGKVSCTI 17411207


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score =  115 bits (289), Expect = 1e-24
 Identities = 51/91 (56%), Positives = 70/91 (76%)
 Frame = -2

Query: 68       KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127
                +VSLVVNVAS+C  TD++Y  L++L ++ GP HF+VLAFPCNQFG+ EP  +KE+ESFAR
Sbjct: 32940151 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFAR 32939972

Query: 128      KNYGVTFPIFHKIKILGSEGEPAFRFLVDSS 158
                + Y V+FP+F KI + G+   PAF++L   S
Sbjct: 32939971 RTYSVSFPMFSKIAVTGTGAHPAFKYLARES 32939879


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score =  110 bits (275), Expect = 4e-23
 Identities = 49/86 (56%), Positives = 66/86 (76%)
 Frame = -2

Query: 69     VSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 128
              VSLVVNVAS+C  TD++Y  L++L ++ GP HF+VLAFPCNQFG  EP  +KE+ESFAR+
Sbjct: 165605 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEIESFARR 165426

Query: 129    NYGVTFPIFHKIKILGSEGEPAFRFL 154
               Y V+FP+F KI +  +   PAF++L
Sbjct: 165425 TYSVSFPMFTKIAVTSTGAYPAFKYL 165348



 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 31/54 (57%), Positives = 41/54 (75%)
 Frame = -1

Query: 156    DSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209
              ++S KEP WN WKYLV P+G+VV  W P   +E IRP I ALVR++I++K+EDL
Sbjct: 165189 ETSGKEPTWNLWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILRKREDL 165028


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
 Frame = -3

Query: 55       AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGES 114
                A G  VSL   +GK  L+ NVAS    T R+Y  + EL +  GPS   VL FPCNQFG  
Sbjct: 15546367 AGGEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVVLGFPCNQFGHQ 15546188

Query: 115      EPRPSKEVESFAR-----KNYGVTFPIFHKIKILGSEGEPAFRFL 154
                E   ++E+ +  +       + + F +F K ++ G+   P F FL
Sbjct: 15546187 ENAKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFL 15546053


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 30/176 (17%)
 Frame = -2

Query: 55       AKGRTVSLE--KYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFG 112
                A GR  + E    +GK  L+ NVAS    T R Y  + EL +  GP    VL+FP N FG
Sbjct: 21100406 APGRRGACEPGSLRGKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFG 21100227

Query: 113      ESEPRPSKEVESFAR-----KNYGVTFPIFHKIKILGSEGEPAFRFLVDS---------- 157
                  E   ++E+ +  +       +   F +F K ++ G+   P F FL ++          
Sbjct: 21100226 PQENAKNEEILNSLKYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATA 21100047

Query: 158      -------------SKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
                              + +  WNF K+LV P+G  V+ +          PDI AL+ Q
Sbjct: 21100046 LMTDPKLIT*SPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDIKALLSQ 21099879


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 50.1 bits (118), Expect = 7e-05
 Identities = 33/83 (39%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = -2

Query: 46       SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105
                SFY        G  V    ++G+  L+ NVAS    T R++  L EL   F P    VL 
Sbjct: 22963250 SFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVLG 22963074

Query: 106      FPCNQFGESEPRPS----KEVES 124
                FPCNQFG     PS    K VES
Sbjct: 22963073 FPCNQFGHQVRGPSL*CTKGVES 22963005


>gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00216,
              whole genome shotgun sequence
          Length = 938135

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 50/139 (35%)
 Frame = +1

Query: 66     KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE------------ 113
              +G V +V NVAS    T+ NY  L +LH  +      +LAFPCNQFG+            
Sbjct: 335248 RGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQVGGCLCPRAPA 335427

Query: 114    --------------------------------------SEPRPSKEVESFARKNYGVTFP 135
                                                     EP  ++E++ FA   Y V F 
Sbjct: 335428 PQRPGGWEWSGFGRGPGSVRAWTEGVPAPQLTRTSPLPQEPGSNEEIKEFA-AGYNVKFD 335604

Query: 136    IFHKIKILGSEGEPAFRFL 154
              +F KI + G +  P ++++
Sbjct: 335605 MFSKICVNGDDAHPLWKWM 335661


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,060,371
Number of Sequences: 2685
Number of extensions: 9486822
Number of successful extensions: 34281
Number of sequences better than 1.0e-03: 7
Number of HSP's better than  0.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 31706
Number of HSP's gapped (non-prelim): 10435
length of query: 209
length of database: 869,524,021
effective HSP length: 125
effective length of query: 84
effective length of database: 869,188,396
effective search space: 73011825264
effective search space used: 73011825264
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)