TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000007_1.0 # Protein # Glutathione peroxidase 4 (GPx4) #
Homo sapiens # Complete
         (197 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic ...   188   2e-62
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    82   2e-14
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...    81   2e-14
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    75   2e-12
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...    73   9e-12
gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...    70   4e-11
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    59   1e-07

>gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00216,
              whole genome shotgun sequence
          Length = 938135

 Score =  188 bits (477), Expect(2) = 2e-62
 Identities = 99/155 (63%), Positives = 100/155 (64%), Gaps = 50/155 (32%)
 Frame = +1

Query: 57     DKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ-------- 108
              D  RGFVCIVTNVASQ GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ        
Sbjct: 335239 DSRRGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQVGGCLCPR 335418

Query: 109    ------------------------------------------EPGSNEEIKEFAAGYNVK 126
                                                        EPGSNEEIKEFAAGYNVK
Sbjct: 335419 APAPQRPGGWEWSGFGRGPGSVRAWTEGVPAPQLTRTSPLPQEPGSNEEIKEFAAGYNVK 335598

Query: 127    FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAI 161
              FDMFSKICVNGDDAHPLWKWMKIQPKGKGILG  +
Sbjct: 335599 FDMFSKICVNGDDAHPLWKWMKIQPKGKGILGKCV 335703



 Score = 74.3 bits (181), Expect(2) = 2e-62
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 29     CASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60
              CASRDDWRCARSMHEFSAKDIDGHMVNLDKYR
Sbjct: 335081 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 335176



 Score = 51.2 bits (121), Expect(2) = 7e-08
 Identities = 27/45 (60%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +1

Query: 146    WMKIQPKGKGILGNAIKWNFT--KFLIDKNGCVVKRYGPMEEPLV 188
              W K    GKG  G  +  N    +FLIDKNGCVVKRYGPMEEP V
Sbjct: 336031 WPKWAVGGKGSPGPLVSSNTVSGQFLIDKNGCVVKRYGPMEEPQV 336165



 Score = 28.1 bits (61), Expect(2) = 7e-08
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 186    PLVIEKDLPHYF 197
              P VIEKDLPHYF
Sbjct: 336233 PQVIEKDLPHYF 336268


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = -2

Query: 63       VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-A 121
                V +V NVAS+ G T+ +Y  L  L          +LAFPCNQFG+QEP  N+EI+ FA  
Sbjct: 32940148 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFARR 32939969

Query: 122      GYNVKFDMFSKICVNGDDAHPLWKWM 147
                 Y+V F MFSKI V G  AHP +K++
Sbjct: 32939968 TYSVSFPMFSKIAVTGTGAHPAFKYL 32939891


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 53/158 (33%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
 Frame = -3

Query: 51       GHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP 110
                G  V+L   RG   ++ NVAS  G T  +YTQ+ +L  R     L +L FPCNQFG QE 
Sbjct: 15546361 GEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVVLGFPCNQFGHQEN 15546182

Query: 111      GSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKG--------- 155
                  NEEI           G+ + F +F K  VNG   HPL+ +++   +            
Sbjct: 15546181 AKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRPCQRPATTPRHS*PT 15546002

Query: 156      ------ILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPL 187
                      +  N + WN  KFL    G  V RY     PL
Sbjct: 15546001 WSPVSLVCHNNVAWNVKKFLDGPTGAPVHRYSWASRPL 15545888


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = -2

Query: 63     VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-A 121
              V +V NVAS+ G T+ +Y  L  L          +LAFPCNQFG QEP  N+EI+ FA  
Sbjct: 165605 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEIESFARR 165426

Query: 122    GYNVKFDMFSKICVNGDDAHPLWKWM 147
               Y+V F MF+KI V    A+P +K++
Sbjct: 165425 TYSVSFPMFTKIAVTSTGAYPAFKYL 165348


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score = 72.8 bits (177), Expect = 9e-12
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
 Frame = -2

Query: 60       RGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEF 119
                RG   ++ NVAS  G T   YTQ+ +L  R    GL +L+FP N FG QE   NEEI   
Sbjct: 21100367 RGKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEILNS 21100188

Query: 120      ------AAGYNVKFDMFSKICVNGDDAHPLWKWMK--------------IQPK---GKGI 156
                        G+   F +F K  V G  +HPL+ +++                PK      +
Sbjct: 21100187 LKYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT*SPV 21100008

Query: 157      LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193
                  N + WNF KFL+  +G  V+RY    + +  E D+
Sbjct: 21100007 CRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDI 21099897


>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = -3

Query: 63       VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-A 121
                V +V NVAS    T+ NY  L +LH  +      +LAFPCNQFG+ EP  ++E++ FA  
Sbjct: 17410621 VSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK 17410442

Query: 122      GYNVKFDMFSKICVNGDDAHPLWKWM 147
                 Y V F +F KI + G +  P ++++
Sbjct: 17410441 NYGVTFPIFHKIKILGSEGEPAFRFL 17410364


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 31/74 (41%), Positives = 45/74 (60%)
 Frame = -2

Query: 38       ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRI 97
                A+S ++ SA  +DG  V+ + +RG   ++ NVAS  G T  ++TQL +L  R+    L +
Sbjct: 22963256 AKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPR-RLVV 22963080

Query: 98       LAFPCNQFGKQEPG 111
                L FPCNQFG Q  G
Sbjct: 22963079 LGFPCNQFGHQVRG 22963038


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.324    0.140    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 645,898,866
Number of Sequences: 2685
Number of extensions: 9200245
Number of successful extensions: 25053
Number of sequences better than 1.0e-03: 7
Number of HSP's better than  0.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 23511
Number of HSP's gapped (non-prelim): 7050
length of query: 197
length of database: 869,524,021
effective HSP length: 124
effective length of query: 73
effective length of database: 869,191,081
effective search space: 63450948913
effective search space used: 63450948913
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)