TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000006_1.0 # Protein # Glutathione peroxidase 3 (GPx3) #
Homo sapiens # Complete
         (226 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic ...   144   3e-33
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...   131   2e-29
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...   125   2e-27
gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic ...   117   4e-25
gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...   105   2e-21
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...    93   1e-17
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...    91   5e-17
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    55   3e-06
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    54   7e-06
gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   1e-04

>gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062,
               whole genome shotgun sequence
          Length = 14149710

 Score =  144 bits (363), Expect = 3e-33
 Identities = 69/78 (88%), Positives = 72/78 (92%), Gaps = 1/78 (1%)
 Frame = +1

Query: 150     TFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209
               + L NSCPPTSEL+GTSDRLFWEPMKVHDIRWNFEKFLVGPDGIP+MRWHHRTTVSNVKM
Sbjct: 9818491 SLL*NSCPPTSELVGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTVSNVKM 9818670

Query: 210     DILSYMR-RQAALGVKRK 226
               DIL YMR RQAA  VKRK
Sbjct: 9818671 DILLYMRHRQAA*EVKRK 9818724



 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 44/52 (84%), Positives = 51/52 (98%)
 Frame = +1

Query: 29      KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYI 80
               ++DCHGG+SGTIYEYGALTI+GEEY+PFKQ+AGKY+LFVNVASY GLTGQYI
Sbjct: 9815905 QVDCHGGMSGTIYEYGALTINGEEYVPFKQFAGKYLLFVNVASY*GLTGQYI 9816060



 Score = 83.2 bits (204), Expect = 9e-15
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +1

Query: 81      ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
               ELNALQEELAPFGLV+LGFPCNQFGKQEPGENSEILP+LK
Sbjct: 9817480 ELNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLK 9817599



 Score = 74.7 bits (182), Expect = 3e-12
 Identities = 34/40 (85%), Positives = 37/40 (92%), Gaps = 1/40 (2%)
 Frame = +3

Query: 120     KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK-NSCPP 158
               +YVRPGGGFVPNFQLFEKGDVNG+KEQKFYTFLK +  PP
Sbjct: 9818010 RYVRPGGGFVPNFQLFEKGDVNGDKEQKFYTFLKVSELPP 9818129


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score =  131 bits (330), Expect = 2e-29
 Identities = 74/156 (47%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
 Frame = -2

Query: 61       GKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL 119
                GK +L  NVAS  G T + Y ++N LQ  L P GLV+L FP N FG QE  +N EIL +L
Sbjct: 21100364 GKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEILNSL 21100185

Query: 120      KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSE---LLGTSDRLFW-EPMK 175
                KYV PGGGF PNF LFEK +V G      + FL+ + P  S+    L T  +L    P+ 
Sbjct: 21100184 KYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT*SPVC 21100005

Query: 176      VHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
                 +D+ WNFEKFLVGPDG+P+ R+  R    + + DI
Sbjct: 21100004 RNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDI 21099897


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score =  125 bits (314), Expect = 2e-27
 Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
 Frame = -3

Query: 37       SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGLV 95
                S  +Y   AL + G E +      GK +L  NVAS+ G T + Y ++N LQ  L P  LV
Sbjct: 15546403 SQLVYALLALPMAGGEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLV 15546224

Query: 96       ILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
                +LGFPCNQFG QE  +N EIL +LKYV PGGGF  NF LF K +VNG +    + FL+  
Sbjct: 15546223 VLGFPCNQFGHQENAKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRP 15546044

Query: 156      C--PPTSELLGTSDRLFWEPMKV---HDIRWNFEKFLVGPDGIPIMR--WHHRTTVSNV 207
                C  P T+          W P+ +   +++ WN +KFL GP G P+ R  W  R   S +
Sbjct: 15546043 CQRPATTP---RHS*PTWSPVSLVCHNNVAWNVKKFLDGPTGAPVHRYSWASRPLTSRL 15545876


>gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225,
              whole genome shotgun sequence
          Length = 700218

 Score =  117 bits (293), Expect = 4e-25
 Identities = 49/69 (71%), Positives = 61/69 (88%)
 Frame = +3

Query: 148    FYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNV 207
              F + L+N+CPPTS+LLG+S++LFWEPMKVHDIRWNFEKFLVGP G+P+MRW HR  VS V
Sbjct: 135564 FISVLQNACPPTSDLLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWFHRIPVSTV 135743

Query: 208    KMDILSYMR 216
              K DIL+Y++
Sbjct: 135744 KSDILAYLK 135770



 Score = 99.8 bits (247), Expect = 9e-20
 Identities = 43/68 (63%), Positives = 55/68 (80%)
 Frame = -2

Query: 150    TFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKM 209
              + L +SCP  SE+LGT   + W+P+KVHDIRWNFEKFLVGPDGIP+MRW H+ TVS VK 
Sbjct: 105455 SLL*HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVSLVKA 105276

Query: 210    DILSYMRR 217
              DI +Y+++
Sbjct: 105275 DIEAYLKQ 105252



 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
 Frame = -3

Query: 81     ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYV---RPGGGFVPNFQLFEK 137
              ELNALQEEL PFGLV+LGFPCNQFGKQEPG+N EILP LK V    P GG    F+  ++
Sbjct: 107635 ELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLK*VPA*NPTGGACVPFRSLQR 107456



 Score = 77.4 bits (189), Expect = 5e-13
 Identities = 38/74 (51%), Positives = 49/74 (66%)
 Frame = +3

Query: 29     KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQYIELNALQEE 88
              ++DC+  ++GTIYEYGA T+ GE YI FKQ+AGK +LFVNVA+Y GLT QY   N+    
Sbjct: 128748 QVDCNNNVTGTIYEYGAFTLSGEGYIQFKQFAGKPILFVNVATYCGLTAQYPGKNS---H 128918

Query: 89     LAPFGLVILGFPCN 102
                 FG      PC+
Sbjct: 128919 FNSFGSRTAS*PCS 128960



 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 31/51 (60%), Positives = 41/51 (80%)
 Frame = -2

Query: 29     KMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQY 79
              +MDCH    GTIY+Y A+ ++ +EY+PFK+Y GK+VLFVNVA+Y GLT QY
Sbjct: 109826 QMDCHRDQKGTIYDYEAIMLNKKEYVPFKRYVGKHVLFVNVATYCGLTAQY 109674



 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -3

Query: 115    ILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLF 170
              I+   +YVRPGGGFVPNFQLFEKGDVNGEKEQK ++FLK      SE L     LF
Sbjct: 107116 IMACCRYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK-----VSEFLAKPPPLF 106964



 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +3

Query: 120    KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNS 155
              +YVRPG GFVPNFQLFEKGDVNGEKEQK +TFLK S
Sbjct: 134058 RYVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKVS 134165



 Score = 67.0 bits (162), Expect = 6e-10
 Identities = 31/40 (77%), Positives = 34/40 (85%)
 Frame = +3

Query: 81     ELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK 120
              ELNALQEEL   G+++LGFPCNQFGKQEPG NSEIL  LK
Sbjct: 133446 ELNALQEELKSLGVIVLGFPCNQFGKQEPGANSEILLGLK 133565


>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score =  105 bits (261), Expect = 2e-21
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
 Frame = +2

Query: 108     EPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSE----LL 163
               E  +N EIL +LKYVRPGGGF PNF LFEK +VNG      + FL+ + P  S+    L+
Sbjct: 8940206 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGSHPLFAFLREALPAPSDDATALM 8940385

Query: 164     GTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211
                    + W P+  +D+ WNFEKFLVGPDG+P+ R+  R    +++ DI
Sbjct: 8940386 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDI 8940529


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
 Frame = -3

Query: 87       EELAPFGLVILGFPCNQ---FGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGE 143
                E ++  G     FPC     F   E  +N EIL +LKYVRPGGG+ P F L +K +VNG+
Sbjct: 22959463 ERVSCCGYFFSPFPCPHSVFFLP*ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQ 22959284

Query: 144      KEQKFYTFLKNSCP----PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWH 199
                 E   + +LK+  P        L+     + W P++  D+ WNFEKFL+GP+G P  R+ 
Sbjct: 22959283 NEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYS 22959104

Query: 200      HRTTVSNVKMDI 211
                      +++ DI
Sbjct: 22959103 RTFPTISIEPDI 22959068



 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = -2

Query: 36       ISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLTGQ-YIELNALQEELAPFGL 94
                I+ + Y+  A+++DGE+ + F  + G+ VL  NVAS  G T + + +LN LQ    P  L
Sbjct: 22963259 IAKSFYDLSAISLDGEK-VDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRL 22963086

Query: 95       VILGFPCNQFGKQEPG 110
                V+LGFPCNQFG Q  G
Sbjct: 22963085 VVLGFPCNQFGHQVRG 22963038


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score = 90.5 bits (223), Expect = 5e-17
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
 Frame = +1

Query: 83      NALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNG 142
               N LQ  L P GL +LGF CNQFG  E     EI  +L+YV P  GF  +  L EK +VN 
Sbjct: 8884144 NELQRRLGPRGLAVLGFRCNQFGH*ENARKEEIRNSLQYVPPRAGFESSVMLLEKCEVNR 8884323

Query: 143     EKEQKFYTFLKNSCPPTS----ELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 198
                  +  +   + + P  S     L+   + +   P    D+ WNFEKFLVGPDG+P+ R+
Sbjct: 8884324 AGSRPLFAVPREALPAPSAHATALMTDRELITGTPGGRSDVVWNFEKFLVGPDGVPVHRY 8884503

Query: 199     HHRTTVSNVKMD 210
                 R    +++ D
Sbjct: 8884504 SCRFQTIDIEPD 8884539


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 65       LFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR 123
                L VNVAS  G T Q Y  L  LQ +L P    +L FPCNQFG+QEP  N EI    +   
Sbjct: 32940142 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFARRT- 32939966

Query: 124      PGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152
                    +  +F +F K  V G      + +L
Sbjct: 32939965 ----YSVSFPMFSKIAVTGTGAHPAFKYL 32939891


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 29/52 (55%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 65     LFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEI 115
              L VNVAS  G T Q Y  L  LQ +L P    +L FPCNQFG QEP  N EI
Sbjct: 165599 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEI 165444


>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = -3

Query: 65       LFVNVASYXGLTGQ-YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR 123
                L VNVAS   LT + Y+ L  L +E  P    +L FPCNQFG+ EP  + E+     + R
Sbjct: 17410615 LVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV---ESFAR 17410445

Query: 124      PGGGFVPNFQLFEKGDVNGEKEQKFYTFL 152
                   G    F +F K  + G + +  + FL
Sbjct: 17410444 KNYGV--TFPIFHKIKILGSEGEPAFRFL 17410364


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.320    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 673,296,791
Number of Sequences: 2685
Number of extensions: 10164761
Number of successful extensions: 38780
Number of sequences better than 1.0e-03: 10
Number of HSP's better than  0.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 35506
Number of HSP's gapped (non-prelim): 12845
length of query: 226
length of database: 869,524,021
effective HSP length: 126
effective length of query: 100
effective length of database: 869,185,711
effective search space: 86918571100
effective search space used: 86918571100
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)