TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000005_1.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Homo sapiens # Complete
         (190 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   245   9e-64
gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...   214   1e-54
gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...   173   3e-42
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...   162   8e-39
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...   147   2e-34
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    57   6e-07
gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic ...    55   2e-06
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    55   2e-06
gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   4e-05
gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic ...    49   2e-04

>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  245 bits (625), Expect = 9e-64
 Identities = 118/128 (92%), Positives = 119/128 (92%), Gaps = 3/128 (2%)
 Frame = -3

Query: 66       FPCNQ---FGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
                FPC     F   ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK
Sbjct: 22959427 FPCPHSVFFLP*ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 22959248

Query: 123      LPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
                LPYPYDDPFSLMTDPK IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTI+IEPDI
Sbjct: 22959247 LPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTISIEPDI 22959068

Query: 183      KRLLKVAI 190
                KRLLKVAI
Sbjct: 22959067 KRLLKVAI 22959044



 Score =  148 bits (374), Expect = 1e-34
 Identities = 73/74 (98%), Positives = 73/74 (98%)
 Frame = -2

Query: 1        MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR 60
                MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL GTTTRDFTQLNELQCRFPRR
Sbjct: 22963268 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRFPRR 22963089

Query: 61       LVVLGFPCNQFGHQ 74
                LVVLGFPCNQFGHQ
Sbjct: 22963088 LVVLGFPCNQFGHQ 22963047


>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score =  214 bits (546), Expect = 1e-54
 Identities = 108/163 (66%), Positives = 126/163 (77%), Gaps = 1/163 (0%)
 Frame = -2

Query: 25       TFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEIL 83
                + RG+ +LIENVASL G T R +TQ+NELQ R  PR LVVL FP N FG QEN +NEEIL
Sbjct: 21100373 SLRGKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEIL 21100194

Query: 84       NSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWS 143
                NSLKYV PGGG++P F L +KCEV G   HP+FA+L++ LP P DD  +LMTDPKLI  S
Sbjct: 21100193 NSLKYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT*S 21100014

Query: 144      PVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
                PV R+DVAWNFEKFL+GP+G P RRYSR F TI+ EPDIK LL
Sbjct: 21100013 PVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDIKALL 21099885


>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score =  173 bits (439), Expect = 3e-42
 Identities = 79/112 (70%), Positives = 93/112 (83%)
 Frame = +2

Query: 75      ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
               EN +NEEILNSLKYVRPGGG++P F L +KCEVNG   HP+FA+L++ LP P DD  +LM
Sbjct: 8940206 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGSHPLFAFLREALPAPSDDATALM 8940385

Query: 135     TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186
               TDPKLI WSPV R+DVAWNFEKFL+GP+G P RRYSR F TI+IEPDI+ LL
Sbjct: 8940386 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 8940541



 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/31 (80%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
 Frame = +1

Query: 45      RDFTQLNELQCRF-PRRLVVLGFPCNQFGHQ 74
               RD+TQ+NELQ R  PR LVVLGFPCNQFGHQ
Sbjct: 8939863 RDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 8939955


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score =  162 bits (410), Expect = 8e-39
 Identities = 93/168 (55%), Positives = 112/168 (66%), Gaps = 6/168 (3%)
 Frame = -3

Query: 9        YDLSAISL-DGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGF 66
                Y L A+ +  GE V  ++ RG+A+LI+NVAS  GTT RD+TQ+NELQ R  P  LVVLGF
Sbjct: 15546391 YALLALPMAGGEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVVLGF 15546212

Query: 67       PCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYP 126
                PCNQFGHQEN +NEEILNSLKYV PGGG++  F+L  K EVNG   HP+FA+L+     P
Sbjct: 15546211 PCNQFGHQENAKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRPCQRP 15546032

Query: 127      YDDP-FSLMTDPKLIIWSPVR---RSDVAWNFEKFLIGPEGEPFRRYS 170
                   P  S  T      WSPV     ++VAWN +KFL GP G P  RYS
Sbjct: 15546031 ATTPRHS*PT------WSPVSLVCHNNVAWNVKKFLDGPTGAPVHRYS 15545906


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score =  147 bits (372), Expect = 2e-34
 Identities = 76/137 (55%), Positives = 93/137 (67%), Gaps = 1/137 (0%)
 Frame = +1

Query: 51      NELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNG 109
               NELQ R  PR L VLGF CNQFGH EN + EEI NSL+YV P  G++ +  L++KCEVN 
Sbjct: 8884144 NELQRRLGPRGLAVLGFRCNQFGH*ENARKEEIRNSLQYVPPRAGFESSVMLLEKCEVNR 8884323

Query: 110     QNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRY 169
                   P+FA  ++ LP P     +LMTD +LI  +P  RSDV WNFEKFL+GP+G P  RY
Sbjct: 8884324 AGSRPLFAVPREALPAPSAHATALMTDRELITGTPGGRSDVVWNFEKFLVGPDGVPVHRY 8884503

Query: 170     SRTFPTINIEPDIKRLL 186
               S  F TI+IEPD + LL
Sbjct: 8884504 SCRFQTIDIEPDTEALL 8884554


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 35/89 (39%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 32       LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
                L+ NVAS  G T + +  L +LQ    P    VL FPCNQFG QE   N+EI +  +   
Sbjct: 32940142 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFARRT- 32939966

Query: 91       PGGGYQPTFTLVQKCEVNGQNEHPVFAYL 119
                    Y  +F +  K  V G   HP F YL
Sbjct: 32939965 ----YSVSFPMFSKIAVTGTGAHPAFKYL 32939891


>gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225,
              whole genome shotgun sequence
          Length = 700218

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
 Frame = -2

Query: 109    GQN--EHP-----VFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGP 161
              G+N  +HP     +F +    L +    P  ++   K I W PV+  D+ WNFEKFL+GP
Sbjct: 105512 GENSLDHPGAQITLFVFSVSLL*HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGP 105333

Query: 162    EGEPFRRYSRTFPTINIEPDIKRLLK 187
              +G P  R+S       ++ DI+  LK
Sbjct: 105332 DGIPVMRWSHQATVSLVKADIEAYLK 105255



 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = +3

Query: 133    LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
              L+     + W P++  D+ WNFEKFL+GP G P  R+    P   ++ DI   LK
Sbjct: 135606 LLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWFHRIPVSTVKSDILAYLK 135770



 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = -3

Query: 82     ILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
              I+   +YVRPGGG+ P F L +K +VNG+ E  VF++LK
Sbjct: 107116 IMACCRYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK 107000



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 31/60 (51%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
 Frame = -3

Query: 49     QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYV---RPGGGYQPTFTLVQK 104
              +LN LQ    P  LVVLGFPCNQFG QE   N+EIL  LK V    P GG    F  +Q+
Sbjct: 107635 ELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLK*VPA*NPTGGACVPFRSLQR 107456


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 32     LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
              L+ NVAS  G T + +  L +LQ    P    VL FPCNQFGHQE   N+EI +  +   
Sbjct: 165599 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEIESFARRT- 165423

Query: 91     PGGGYQPTFTLVQKCEVNGQNEHPVFAYL 119
                  Y  +F +  K  V     +P F YL
Sbjct: 165422 ----YSVSFPMFTKIAVTSTGAYPAFKYL 165348


>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
 Frame = -3

Query: 32       LIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVR 90
                L+ NVAS    T R++  L EL   F P    VL FPCNQFG  E   ++E+ +  +   
Sbjct: 17410615 LVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR--- 17410445

Query: 91       PGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
                    Y  TF +  K ++ G    P F +L  K
Sbjct: 17410444 --KNYGVTFPIFHKIKILGSEGEPAFRFLVGK 17410355


>gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062,
               whole genome shotgun sequence
          Length = 14149710

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +1

Query: 140     IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 182
               + W P++  D+ WNFEKFL+GP+G P  R+       N++ DI
Sbjct: 9818548 LFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTVSNVKMDI 9818676



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 29/53 (54%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +1

Query: 49      QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFT 100
               +LN LQ    P  LVVLGFPCNQFG QE  +N EIL SLK V      +  FT
Sbjct: 9817480 ELNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLK*VLSQHSKKTPFT 9817638


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.323    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,665,406
Number of Sequences: 2685
Number of extensions: 9467435
Number of successful extensions: 25749
Number of sequences better than 1.0e-03: 10
Number of HSP's better than  0.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 23710
Number of HSP's gapped (non-prelim): 8483
length of query: 190
length of database: 869,524,021
effective HSP length: 123
effective length of query: 67
effective length of database: 869,193,766
effective search space: 58235982322
effective search space used: 58235982322
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 107 (45.8 bits)