TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000004_1.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Homo sapiens # Complete
         (203 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic ...   309   6e-83
gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic ...   248   2e-64
gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic ...   227   2e-58
gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic ...   219   6e-56
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   172   9e-42
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    72   1e-11
gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic ...    71   4e-11
gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic ...    62   2e-08
gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic ...    58   2e-07
gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic ...    57   4e-07
gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic ...    50   5e-05

>gb|JH378119.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00015,
                whole genome shotgun sequence
          Length = 36383700

 Score =  309 bits (791), Expect = 6e-83
 Identities = 155/171 (90%), Positives = 158/171 (92%)
 Frame = -2

Query: 33       GSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEI 92
                GSLRGK LLIENVASL G TVR YTQMNELQRRLGPRGLVVL FP N FG QENAKNEEI
Sbjct: 21100376 GSLRGKGLLIENVASL*GPTVRAYTQMNELQRRLGPRGLVVLSFPGNPFGPQENAKNEEI 21100197

Query: 93       LNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITW 152
                LNSLKYV PGGGFEPNFMLFEKCEV GAG+HPLFAFLREALPAPSDDATALMTDPKLIT 
Sbjct: 21100196 LNSLKYV*PGGGFEPNFMLFEKCEVKGAGSHPLFAFLREALPAPSDDATALMTDPKLIT* 21100017

Query: 153      SPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 203
                SPVCRNDVAWNFEKFLVGPDGVP+RRYSRRFQTID EPDI+ALLSQGP CA
Sbjct: 21100016 SPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDKEPDIKALLSQGPRCA 21099864


>gb|JH378190.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00086,
               whole genome shotgun sequence
          Length = 9530769

 Score =  248 bits (632), Expect = 2e-64
 Identities = 117/119 (98%), Positives = 119/119 (100%)
 Frame = +2

Query: 85      ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALM 144
               ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAG+HPLFAFLREALPAPSDDATALM
Sbjct: 8940206 ENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGSHPLFAFLREALPAPSDDATALM 8940385

Query: 145     TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA 203
               TDPKLITWSPVCRNDVAWNFEKFLVGPDGVP+RRYSRRFQTIDIEPDIEALLSQGPSCA
Sbjct: 8940386 TDPKLITWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALLSQGPSCA 8940562



 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +1

Query: 53      VRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84
               VRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ
Sbjct: 8939860 VRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 8939955


>gb|JH378152.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00048,
                whole genome shotgun sequence
          Length = 16679805

 Score =  227 bits (579), Expect = 2e-58
 Identities = 122/170 (71%), Positives = 129/170 (75%), Gaps = 3/170 (1%)
 Frame = -3

Query: 14       QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
                Q VYA  A P+AGGEPVSL SLRGK LLI+NVAS  GTTVRDYTQMNELQRRLGP  LVV
Sbjct: 15546400 QLVYALLALPMAGGEPVSLSSLRGKALLIKNVASF*GTTVRDYTQMNELQRRLGPSDLVV 15546221

Query: 74       LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
                LGFPCNQFGHQENAKNEEILNSLKYV PGGGFE NF LF K EVNGA  HPLFAFLR   
Sbjct: 15546220 LGFPCNQFGHQENAKNEEILNSLKYV*PGGGFELNFSLFGKREVNGARLHPLFAFLRRPC 15546041

Query: 134      PAPSDDATALMTDPKLITWSP---VCRNDVAWNFEKFLVGPDGVPLRRYS 180
                  P+   T   + P   TWSP   VC N+VAWN +KFL GP G P+ RYS
Sbjct: 15546040 QRPA--TTPRHS*P---TWSPVSLVCHNNVAWNVKKFLDGPTGAPVHRYS 15545906



 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 34/80 (42%), Positives = 42/80 (52%)
 Frame = -2

Query: 124      PLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRF 183
                P F    EALP PS+D+TALMTD  L++             ++    P   P  +    F
Sbjct: 15546071 PSFRLPAEALPTPSNDSTALMTD--LVSSVSGVSQQCCLERQEVPGWPYRCPRAQVQLGF 15545898

Query: 184      QTIDIEPDIEALLSQGPSCA 203
                QTIDIE DI+ALLSQ  S A
Sbjct: 15545897 QTIDIEADIQALLSQQSSHA 15545838


>gb|JH378112.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00008,
               whole genome shotgun sequence
          Length = 45331107

 Score =  219 bits (558), Expect = 6e-56
 Identities = 124/184 (67%), Positives = 134/184 (72%), Gaps = 4/184 (2%)
 Frame = +1

Query: 24      LAGGEPVSLGSLRGKVLLI----ENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 79
               LAGG PVS GS RG+         + A   GT        NELQRRLGPRGL VLGF CN
Sbjct: 8884042 LAGG-PVSPGSPRGRRCFSGTRRPSEAPRAGTPPG-----NELQRRLGPRGLAVLGFRCN 8884203

Query: 80      QFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDD 139
               QFGH ENA+ EEI NSL+YV P  GFE + ML EKCEVN AG+ PLFA  REALPAPS  
Sbjct: 8884204 QFGH*ENARKEEIRNSLQYVPPRAGFESSVMLLEKCEVNRAGSRPLFAVPREALPAPSAH 8884383

Query: 140     ATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQG 199
               ATALMTD +LIT +P  R+DV WNFEKFLVGPDGVP+ RYS RFQTIDIEPD EALLSQG
Sbjct: 8884384 ATALMTDRELITGTPGGRSDVVWNFEKFLVGPDGVPVHRYSCRFQTIDIEPDTEALLSQG 8884563

Query: 200     PSCA 203
               PS A
Sbjct: 8884564 PSYA 8884575


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  172 bits (436), Expect = 9e-42
 Identities = 82/124 (66%), Positives = 95/124 (76%), Gaps = 3/124 (2%)
 Frame = -3

Query: 76       FPCNQ---FGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREA 132
                FPC     F   EN +NEEILNSLKYVRPGGG++P F L +KCEVNG   HP+FA+L++ 
Sbjct: 22959427 FPCPHSVFFLP*ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 22959248

Query: 133      LPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192
                LP P DD  +LMTDPK I WSPV R+DVAWNFEKFL+GP+G P RRYSR F TI IEPDI
Sbjct: 22959247 LPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTISIEPDI 22959068

Query: 193      EALL 196
                + LL
Sbjct: 22959067 KRLL 22959056



 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 46/71 (64%), Positives = 52/71 (73%)
 Frame = -2

Query: 14       QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
                +S Y  SA  L  GE V   + RG+ +LIENVASL GTT RD+TQ+NELQ R  PR LVV
Sbjct: 22963253 KSFYDLSAISL-DGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVV 22963080

Query: 74       LGFPCNQFGHQ 84
                LGFPCNQFGHQ
Sbjct: 22963079 LGFPCNQFGHQ 22963047


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 40/92 (43%), Positives = 52/92 (56%)
 Frame = -2

Query: 38       KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
                +V L+ NVAS  G T + Y  + +LQR LGP    VL FPCNQFG QE   N+EI +  +
Sbjct: 32940151 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDGNKEIESFAR 32939972

Query: 98       YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
                       +  +F +F K  V G GAHP F +L
Sbjct: 32939971 RT-----YSVSFPMFSKIAVTGTGAHPAFKYL 32939891


>gb|JH378213.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00109,
              whole genome shotgun sequence
          Length = 7396992

 Score = 70.9 bits (172), Expect = 4e-11
 Identities = 40/95 (42%), Positives = 52/95 (54%)
 Frame = -2

Query: 39     VLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKY 98
              V L+ NVAS  G T + Y  + +LQR LGP    VL FPCNQFGHQE   N+EI +  + 
Sbjct: 165605 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGHQEPDGNKEIESFARR 165426

Query: 99     VRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
                    +  +F +F K  V   GA+P F +L   L
Sbjct: 165425 T-----YSVSFPMFTKIAVTSTGAYPAFKYLARLL 165336


>gb|JH378329.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00225,
              whole genome shotgun sequence
          Length = 700218

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 31/72 (43%), Positives = 45/72 (62%)
 Frame = -2

Query: 127    AFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI 186
              + L  + P PS+    ++   K I+W PV  +D+ WNFEKFLVGPDG+P+ R+S +    
Sbjct: 105455 SLL*HSCPHPSE----ILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHQATVS 105288

Query: 187    DIEPDIEALLSQ 198
               ++ DIEA L Q
Sbjct: 105287 LVKADIEAYLKQ 105252



 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 29/72 (40%), Positives = 39/72 (54%)
 Frame = +3

Query: 129    LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDI 188
              L+ A P  SD    L+     + W P+  +D+ WNFEKFLVGP GVP+ R+  R     +
Sbjct: 135576 LQNACPPTSD----LLGSSNQLFWEPMKVHDIRWNFEKFLVGPHGVPVMRWFHRIPVSTV 135743

Query: 189    EPDIEALLSQGP 200
              + DI A L   P
Sbjct: 135744 KSDILAYLKPNP 135779



 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
 Frame = -3

Query: 58     QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYV---RPGGG 104
              ++N LQ  L P GLVVLGFPCNQFG QE   N+EIL  LK V    P GG
Sbjct: 107635 ELNALQEELKPFGLVVLGFPCNQFGKQEPGDNKEILPGLK*VPA*NPTGG 107486



 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 24/41 (58%), Positives = 28/41 (68%)
 Frame = +3

Query: 57     TQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
              T++N LQ  L   G++VLGFPCNQFG QE   N EIL  LK
Sbjct: 133443 TELNALQEELKSLGVIVLGFPCNQFGKQEPGANSEILLGLK 133565



 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = -3

Query: 92     ILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130
              I+   +YVRPGGGF PNF LFEK +VNG     +F+FL+
Sbjct: 107116 IMACCRYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLK 107000



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +3

Query: 97     KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 133
              +YVRPG GF PNF LFEK +VNG     +F FL+ ++
Sbjct: 134058 RYVRPGSGFVPNFQLFEKGDVNGEKEQKVFTFLKVSI 134168


>gb|JH378120.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00016,
                whole genome shotgun sequence
          Length = 32907957

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 34/92 (36%), Positives = 48/92 (52%)
 Frame = -3

Query: 38       KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
                +V L+ NVAS    T R+Y  + EL +  GP    VL FPCNQFG  E   ++E+ +   
Sbjct: 17410624 EVSLVVNVASDCQLTDRNYLALKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES--- 17410454

Query: 98       YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
                + R   G    F +F K ++ G+   P F FL
Sbjct: 17410453 FARKNYGV--TFPIFHKIKILGSEGEPAFRFL 17410364


>gb|JH378166.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00062,
               whole genome shotgun sequence
          Length = 14149710

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 27/40 (67%), Positives = 30/40 (75%)
 Frame = +1

Query: 58      QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
               ++N LQ  L P GLVVLGFPCNQFG QE  +N EIL SLK
Sbjct: 9817480 ELNALQEELAPFGLVVLGFPCNQFGKQEPGENSEILPSLK 9817599



 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +1

Query: 152     WSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDI 192
               W P+  +D+ WNFEKFLVGPDG+P+ R+  R    +++ DI
Sbjct: 9818554 WEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTVSNVKMDI 9818676



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +3

Query: 97      KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130
               +YVRPGGGF PNF LFEK +VNG      + FL+
Sbjct: 9818010 RYVRPGGGFVPNFQLFEKGDVNGDKEQKFYTFLK 9818111


>gb|JH378320.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00216,
              whole genome shotgun sequence
          Length = 938135

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 26/51 (50%), Positives = 32/51 (62%)
 Frame = +1

Query: 34     SLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 84
              S RG V ++ NVAS  G T  +YTQ+ +L  R    GL +L FPCNQFG Q
Sbjct: 335242 SRRGFVCIVTNVASQ*GKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 335394


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.321    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,229,791
Number of Sequences: 2685
Number of extensions: 8651637
Number of successful extensions: 26011
Number of sequences better than 1.0e-03: 11
Number of HSP's better than  0.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 24072
Number of HSP's gapped (non-prelim): 8330
length of query: 203
length of database: 869,524,021
effective HSP length: 124
effective length of query: 79
effective length of database: 869,191,081
effective search space: 68666095399
effective search space used: 68666095399
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)