TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic ...   544   e-153
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   140   7e-32
gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...    66   2e-09

>gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00149,
              whole genome shotgun sequence
          Length = 4236321

 Score =  544 bits (1402), Expect = e-153
 Identities = 262/266 (98%), Positives = 264/266 (99%)
 Frame = -2

Query: 13     CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDP 72
              CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEP+VELNSEGEEVPPDDP
Sbjct: 643760 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPDVELNSEGEEVPPDDP 643581

Query: 73     PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132
              PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQ ILDYAQGN
Sbjct: 643580 PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQRILDYAQGN 643401

Query: 133    RPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ 192
              RPLVLNFGSCT PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ
Sbjct: 643400 RPLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ 643221

Query: 193    HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 252
              HRSLEDRVSAA+VLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD
Sbjct: 643220 HRSLEDRVSAAKVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 643041

Query: 253    GYQVSELRTWLERYDEQLHGARPRRV 278
              GYQVSELRTWLERYDEQLHGARPRRV
Sbjct: 643040 GYQVSELRTWLERYDEQLHGARPRRV 642963


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  140 bits (353), Expect = 7e-32
 Identities = 78/190 (41%), Positives = 111/190 (58%), Gaps = 23/190 (12%)
 Frame = -2

Query: 99       FFKQAHEGGPAPNSEVVLPDGFQSQ-----------------HILDYAQGNRPLVLNFGS 141
                F+ Q   G  APNS VV   G +                   H+LD+A   RPLV+NFGS
Sbjct: 38189975 FYHQVKLGEDAPNSSVVRVSGAEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGS 38189796

Query: 142      CTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-VTTDS--PYIIPQHRSLED 198
                 T PPF +++ AF +LV ++    DFL++YI+EAHPSDGW +  DS   + + +H+S ED
Sbjct: 38189795 AT*PPFTSQLPAFCKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSWSFEVKKHQSQED 38189616

Query: 199      RVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGYQ 255
                R +AA+ L +     P C +V D M N+++ AYG  FER+ ++Q   I Y GG+GP  Y 
Sbjct: 38189615 RCAAAQKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFSYN 38189436

Query: 256      VSELRTWLER 265
                + E+R WLE+
Sbjct: 38189435 LQEVRHWLEK 38189406


>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
 Frame = -1

Query: 179      DGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238
                DGW   ++   I  H++L+DR+ AA +L   +P C +V+DTM N SS  Y A  ERLY+I
Sbjct: 31635395 DGWAFKNN-VDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYII 31635219

Query: 239      QSGTIMY---------QGGRGPDGYQVSELRTWLER 265
                Q G I+Y         QGG+G  G      R W +R
Sbjct: 31635218 QEGRILYKVVTWG*GAQGGKGVQGG-----RAWAKR 31635126



 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/48 (64%), Positives = 34/48 (70%)
 Frame = -2

Query: 131      GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS 178
                GNRPLVLNFGSCT P FM +   F+RL   +    DFLIIYIEEAH S
Sbjct: 31640728 GNRPLVLNFGSCT*PSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS 31640585


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 984,521,129
Number of Sequences: 2685
Number of extensions: 17279158
Number of successful extensions: 63324
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 58338
Number of HSP's gapped (non-prelim): 21382
length of query: 278
length of database: 869,524,021
effective HSP length: 129
effective length of query: 149
effective length of database: 869,177,656
effective search space: 129507470744
effective search space used: 129507470744
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)