TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome.f
a 
           2685 sequences; 2,608,572,064 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic ...   188   2e-46
gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic ...   152   2e-35
gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic ...   137   4e-31

>gb|JH378108.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00004,
                whole genome shotgun sequence
          Length = 54856640

 Score =  188 bits (478), Expect = 2e-46
 Identities = 87/113 (76%), Positives = 91/113 (80%)
 Frame = -2

Query: 1        MGLPQPGLWLKRXXXXXXXXXXXXXXXXXXXXFPDRVKRNILAMGEKTGMTRNPHFSHDN 60
                MGLP PGLWLKR                    FPDRVK+NILAMG+KTGMTRNP+FSHDN
Sbjct: 31651051 MGLPGPGLWLKRLWVLLEVAVHVAVGKLLLTLFPDRVKKNILAMGDKTGMTRNPNFSHDN 31650872

Query: 61       WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQG 113
                WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVV LSGQRCNIW+FMQG
Sbjct: 31650871 WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVHLSGQRCNIWDFMQG 31650713



 Score =  136 bits (343), Expect = 8e-31
 Identities = 65/67 (97%), Positives = 67/67 (100%)
 Frame = -1

Query: 161      DGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQ 220
                DGWAFKNN+DIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSS+LYAALPERLYIIQ
Sbjct: 31635395 DGWAFKNNVDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSELYAALPERLYIIQ 31635216

Query: 221      EGRILYK 227
                EGRILYK
Sbjct: 31635215 EGRILYK 31635195



 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 44/50 (88%), Positives = 47/50 (94%)
 Frame = -2

Query: 111      MQGNRPLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS 160
                + GNRPLVLNFGSCT PSFMFKFDQFKRL EDFSS+ADFL+IYIEEAHAS
Sbjct: 31640734 VSGNRPLVLNFGSCT*PSFMFKFDQFKRLTEDFSSVADFLIIYIEEAHAS 31640585



 Score = 51.6 bits (122), Expect = 3e-05
 Identities = 29/64 (45%), Positives = 33/64 (51%)
 Frame = -1

Query: 186      LLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVRAVLE 245
                L L+  P CP+ V  +    S                  L +GKSGPWNYNPEEVR VLE
Sbjct: 31632305 LQLSSRPTCPLQVGNLGMPDS-----------------FLLQGKSGPWNYNPEEVRDVLE 31632177

Query: 246      KLHS 249
                KLHS
Sbjct: 31632176 KLHS 31632165


>gb|JH378253.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00149,
              whole genome shotgun sequence
          Length = 4236321

 Score =  152 bits (383), Expect = 2e-35
 Identities = 87/192 (45%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
 Frame = -2

Query: 57     SHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSG-QRCNIWEFMQGNR 115
              S DN + T  S +  W   K+ + +       GG APN  VV   G Q   I ++ QGNR
Sbjct: 643568 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPDGFQSQRILDYAQGNR 643398

Query: 116    PLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN-MDIRNH 174
              PLVLNFGSCT P FM +   F+RL+  +    DFL+IYIEEAH SDGW   ++   I  H
Sbjct: 643397 PLVLNFGSCT*PPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQH 643218

Query: 175    QNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWN 234
              ++L+DR+ AA +L   +P C +V+DTM N SS  Y A  ERLY+IQ G I+Y+G  GP  
Sbjct: 643217 RSLEDRVSAAKVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDG 643038

Query: 235    YNPEEVRAVLEK 246
              Y   E+R  LE+
Sbjct: 643037 YQVSELRTWLER 643002


>gb|JH378115.1| Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00011,
                whole genome shotgun sequence
          Length = 43820709

 Score =  137 bits (346), Expect = 4e-31
 Identities = 78/185 (42%), Positives = 106/185 (57%), Gaps = 25/185 (13%)
 Frame = -2

Query: 87       ELGGLAPNCPVVRLSGQR------------------CNIWEFMQGNRPLVLNFGSCTXPS 128
                +LG  APN  VVR+SG                    C++ +F    RPLV+NFGS T P 
Sbjct: 38189960 KLGEDAPNSSVVRVSGAEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT*PP 38189781

Query: 129      FMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN----NMDIRNHQNLQDRLQAA 184
                F  +   F +L+E+FSS+ADFL++YI+EAH SDGWA       + +++ HQ+ +DR  AA
Sbjct: 38189780 FTSQLPAFCKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSWSFEVKKHQSQEDRCAAA 38189601

Query: 185      HLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVR 241
                  LL R    PQC VV D M N ++  Y    ER+ I+Q  +I Y G  GP++YN +EVR
Sbjct: 38189600 QKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVR 38189421

Query: 242      AVLEK 246
                  LEK
Sbjct: 38189420 HWLEK 38189406


  Database: /cursos/BI/genomes/project_2013/Saimiri_boliviensis/genome
  .fa
    Posted date:  Oct 24, 2012  8:25 PM
  Number of letters in database: 2,608,572,064
  Number of sequences in database:  2685
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 861,852,818
Number of Sequences: 2685
Number of extensions: 12830960
Number of successful extensions: 65425
Number of sequences better than 1.0e-03: 3
Number of HSP's better than  0.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 59846
Number of HSP's gapped (non-prelim): 23516
length of query: 249
length of database: 869,524,021
effective HSP length: 127
effective length of query: 122
effective length of database: 869,183,026
effective search space: 106040329172
effective search space used: 106040329172
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 109 (46.6 bits)