TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete
         (229 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418011.1| Mustela putorius furo unplaced genomic scaffold s...   116   7e-25
gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold s...    46   0.001

>gb|JH418011.1| Mustela putorius furo unplaced genomic scaffold scaffold00039, whole genome
               shotgun sequence
          Length = 13940559

 Score =  116 bits (291), Expect = 7e-25
 Identities = 54/60 (90%), Positives = 57/60 (95%)
 Frame = -3

Query: 133     FLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ 192
               FL  +K+FYGPQRRKMMFMGF+RLGVWYNFFRA NGGFSGNLEGEGFILGGVFVVGSGKQ
Sbjct: 2113159 FLILQKRFYGPQRRKMMFMGFVRLGVWYNFFRARNGGFSGNLEGEGFILGGVFVVGSGKQ 2112980



 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 42/48 (87%), Positives = 45/48 (93%)
 Frame = -3

Query: 90      EEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK 137
               +EAADLSSLK  LD+LGVPLYAVVKE IRTEV+DFQPYFKGEIFLDEK
Sbjct: 2113966 QEAADLSSLKPKLDELGVPLYAVVKEQIRTEVQDFQPYFKGEIFLDEK 2113823



 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 44/63 (69%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
 Frame = -3

Query: 1       MSFLQDPSFFTMGMWSIXXXXXXXXXXXXXXXNTDVFLSKPQKAALEYLEDIDLKTLEK- 59
               MSFLQDPSFFTMGMWSI               NTDVFLSK QKA LEYLEDIDLKTLEK 
Sbjct: 2119060 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKSQKATLEYLEDIDLKTLEKG 2118881

Query: 60      EPR 62
               +PR
Sbjct: 2118880 KPR 2118872



 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = -2

Query: 60      EPRTFKAKELWEKNGAVIMAVRRPGCFLCRE 90
               EPRTFKAKELWEKNGAVIMAVRRPGCFLCRE
Sbjct: 2116994 EPRTFKAKELWEKNGAVIMAVRRPGCFLCRE 2116902



 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 28/37 (75%), Positives = 33/37 (89%)
 Frame = -2

Query: 193     GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229
               GILLEHREKEFGDKVN +SVLEAA+ I+PQT A++ K
Sbjct: 2110235 GILLEHREKEFGDKVNPVSVLEAARKIQPQTSAAKSK 2110125


>gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold scaffold00001, whole genome
                shotgun sequence
          Length = 38702089

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 25/64 (39%), Positives = 35/64 (54%)
 Frame = -1

Query: 67       KELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQP 126
                + LW +   V+  +RR GC +CR  A DLSSL+ +LD+ GV L  V  E +  +      
Sbjct: 37433107 RSLWREQACVVAGLRRFGCSVCRWIARDLSSLRGLLDRHGVRLVGVGPEALGLQEFLDGG 37432928

Query: 127      YFKG 130
                YF G
Sbjct: 37432927 YFSG 37432916


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.322    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,431,617
Number of Sequences: 4245
Number of extensions: 9113261
Number of successful extensions: 27918
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 25614
Number of HSP's gapped (non-prelim): 7898
length of query: 229
length of database: 800,060,566
effective HSP length: 126
effective length of query: 103
effective length of database: 799,525,696
effective search space: 82351146688
effective search space used: 82351146688
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)
