TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000115_1.0 # Protein # Selenoprotein S (SelS) # Mus
musculus # Complete
         (190 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418047.1| Mustela putorius furo unplaced genomic scaffold s...    84   2e-15
gb|JH417992.1| Mustela putorius furo unplaced genomic scaffold s...    49   1e-04
gb|JH418320.1| Mustela putorius furo unplaced genomic scaffold s...    35   2.2  
gb|JH418264.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  
gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  
gb|JH418037.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  
gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  
gb|JH417994.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  
gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.4  

>gb|JH418047.1| Mustela putorius furo unplaced genomic scaffold scaffold00075, whole genome
               shotgun sequence
          Length = 9322345

 Score = 84.3 bits (207), Expect = 2e-15
 Identities = 37/48 (77%), Positives = 43/48 (89%)
 Frame = +1

Query: 116     IEMWDSMQEGRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGG 163
               IEMWDSMQEG+SYK N+ +P EEDGPGPSTSSV+PK K+D+KPLRG G
Sbjct: 3094819 IEMWDSMQEGKSYKGNARKPPEEDGPGPSTSSVLPKRKADRKPLRGSG 3094962



 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/29 (89%), Positives = 29/29 (100%)
 Frame = +3

Query: 69      VLEPDVVVKRQEALAAARLRMQEDLNAQV 97
               +LEPDVVVKRQEALAAARL+MQE+LNAQV
Sbjct: 3091827 ILEPDVVVKRQEALAAARLKMQEELNAQV 3091913



 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 25      TVGSLLASYGWYILFSCILLYIV 47
               +VGSLLA+YGWYI+FSCILLY+V
Sbjct: 3089747 SVGSLLATYGWYIVFSCILLYVV 3089815



 Score = 42.0 bits (97), Expect = 0.014
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +3

Query: 1       MDRDEEPLSARPALETESLRFLHVT 25
               M+RD + LSARPALETE LR+LHVT
Sbjct: 3089049 MERDGQQLSARPALETEGLRYLHVT 3089123



 Score = 38.9 bits (89), Expect = 0.12
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +1

Query: 163     GYNPLTGEGGGTCSW 177
               GYNPL+GEGGGTCSW
Sbjct: 3096979 GYNPLSGEGGGTCSW 3097023


>gb|JH417992.1| Mustela putorius furo unplaced genomic scaffold scaffold00020, whole genome
                shotgun sequence
          Length = 19865338

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
 Frame = +3

Query: 68       TVLEPDVVVKRQEALAAARLRMQEDLNAQ---VXXXXXXXXXXXXXXXXXXIEMWDSMQE 124
                T +EPDVVVK QEALAA  ++M+E+LN Q                      +EMWDSMQE
Sbjct: 14574288 TAVEPDVVVKGQEALAA--VKMEEELNMQSEKYKEKLRQLEEEQQQKKETELEMWDSMQE 14574461

Query: 125      GRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDK 156
                G+        PQ++   G     VI K KSD+
Sbjct: 14574462 GKGMMEM*ESPQKKTLQG-FLFHVIVK*KSDR 14574554


>gb|JH418320.1| Mustela putorius furo unplaced genomic scaffold scaffold00348, whole
              genome shotgun sequence
          Length = 1042523

 Score = 34.7 bits (78), Expect = 2.2
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = -3

Query: 158    PLRGGGYNPLTGEGGGTCSW 177
              PL  GGYN L GEG G+C+W
Sbjct: 688539 PLDPGGYNVLCGEGSGSCAW 688480


>gb|JH418264.1| Mustela putorius furo unplaced genomic scaffold scaffold00292, whole genome
               shotgun sequence
          Length = 1725057

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
 Frame = +3

Query: 124     EGRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKP---------LRGGGYNPLTGEGGGT 174
               E     R   +   E GPGP       +  S  +P         +RG    P  G GGG 
Sbjct: 1223736 EPEENSRKCKQESREPGPGPGAEGWASRQASRAEPHQRREVGGTVRGRSMQPCRGHGGGA 1223915

Query: 175     CSW 177
               C W
Sbjct: 1223916 CRW 1223924


>gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold scaffold00122, whole genome
               shotgun sequence
          Length = 6602453

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 126     RSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGG 173
               RS+K    R +E  GPG  T   + +G+  + P   G   P    GGG
Sbjct: 1113612 RSWKLEGSRSKEGSGPGDPTGPTVGRGRVGRGPGYCGVLGPYKATGGG 1113469


>gb|JH418037.1| Mustela putorius furo unplaced genomic scaffold scaffold00065, whole genome
               shotgun sequence
          Length = 10416066

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 132     SGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGGTCS 176
               +G P    GPGP   S+ P       P+ GGG   LT   G  CS
Sbjct: 2696611 AGTPTPPGGPGPEG*SISPDTSVLWAPVEGGGRGGLTSAAGPFCS 2696477


>gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold scaffold00045, whole genome
               shotgun sequence
          Length = 12738967

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
 Frame = +1

Query: 121     SMQEGRSYKRNSGRP---------QEEDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEG 171
               S++ G S  R SGR          Q   G  PS     P G  DK   RGGG    +G G
Sbjct: 6495751 SLRVGWSSGRPSGRAPLRYDRCPRQRRVGDRPSRRGGCPAGMRDKSA-RGGGDRDRSGTG 6495927

Query: 172     GGTCSW 177
                GT SW
Sbjct: 6495928 RGTRSW 6495945


>gb|JH417994.1| Mustela putorius furo unplaced genomic scaffold scaffold00022, whole genome
               shotgun sequence
          Length = 19604161

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 125     GRSYKRNSGRPQEEDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGG 173
               GR+ KRN  +   E GPGP  +S++P+ +      RG G    TG   G
Sbjct: 4238579 GRNGKRNGRQQSSEAGPGP-PASLLPRAQQCLGHCRGAGQAHRTGAAAG 4238722


>gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold scaffold00001, whole genome
                shotgun sequence
          Length = 38702089

 Score = 32.7 bits (73), Expect = 8.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 138      EDGPGPSTSSVIPKGKSDKKPLRGGGYNPLTGEGGGTCSW 177
                E   G    +  P  +  + P R GG+ P +G GG  CSW
Sbjct: 34659161 EPSDGTPMGASTPH*EIPRGPARAGGWGPSSGVGGWNCSW 34659280


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.314    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,595,959
Number of Sequences: 4245
Number of extensions: 5273767
Number of successful extensions: 31065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 22076
Number of HSP's gapped (non-prelim): 19278
length of query: 190
length of database: 800,060,566
effective HSP length: 123
effective length of query: 67
effective length of database: 799,538,431
effective search space: 53569074877
effective search space used: 53569074877
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 72 (32.3 bits)
