TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417977.1| Mustela putorius furo unplaced genomic scaffold s...    53   3e-16
gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold s...    84   4e-15
gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold s...    54   3e-06
gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold s...    36   1.1  
gb|JH418008.1| Mustela putorius furo unplaced genomic scaffold s...    34   3.3  
gb|JH418333.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  
gb|JH418239.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  
gb|JH418142.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  
gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  
gb|JH418083.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  
gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold s...    33   9.5  

>gb|JH417977.1| Mustela putorius furo unplaced genomic scaffold scaffold00005, whole genome
               shotgun sequence
          Length = 28906864

 Score = 53.1 bits (126), Expect(3) = 3e-16
 Identities = 27/41 (65%), Positives = 30/41 (73%)
 Frame = -3

Query: 113     PLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTS 153
               PLF SE+KYCS TG  SFSEA   SGSDE  TG+ R +DTS
Sbjct: 6898343 PLFCSERKYCSSTG*SSFSEAC*MSGSDEISTGLPRHVDTS 6898221



 Score = 37.0 bits (84), Expect(3) = 3e-16
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -2

Query: 79      QFYVTREKGTEPPFSGIYLNNKEAGMY 105
               +FYV REKG E  FSGI L+N E+G Y
Sbjct: 6898443 KFYVMREKGRELSFSGINLHNTESGRY 6898363



 Score = 37.0 bits (84), Expect(3) = 3e-16
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -1

Query: 178     PGPNGQRFCINSVALKFKPRKH 199
               PGP GQ FCI S ALK  PR+H
Sbjct: 6898174 PGPTGQSFCILSAALKLHPRRH 6898109


>gb|JH418032.1| Mustela putorius furo unplaced genomic scaffold scaffold00060, whole genome
               shotgun sequence
          Length = 10735860

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 38/50 (76%), Positives = 42/50 (84%)
 Frame = +2

Query: 116     SSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ 165
               SS+ KYCSG+GWP+FSEAHG SGSDE    ILRR+DTSLG  RTEVVCKQ
Sbjct: 7279469 SSDHKYCSGSGWPAFSEAHGASGSDERDASILRRVDTSLGLTRTEVVCKQ 7279618



 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 33/35 (94%), Positives = 35/35 (100%)
 Frame = +1

Query: 165     QCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 199
               QCEAHLGHVFPDGPGP+GQRFCINSVALKFKPR+H
Sbjct: 7280338 QCEAHLGHVFPDGPGPSGQRFCINSVALKFKPRRH 7280442



 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +3

Query: 91      PFSGIYLNNKEAGMYHCVCCDSPLF 115
               PFSG YLNNKE+GMYHCVCCDSPLF
Sbjct: 7274061 PFSGAYLNNKESGMYHCVCCDSPLF 7274135



 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 58      SLATCELPLAKSEWQKKLTPEQFYVTREKGTEP 90
               SL   E  L+K EW++KLTPEQFYVT+EKGTEP
Sbjct: 7269714 SLTKHEPSLSKGEWRRKLTPEQFYVTQEKGTEP 7269812


>gb|JH418020.1| Mustela putorius furo unplaced genomic scaffold scaffold00048, whole genome
                shotgun sequence
          Length = 12217663

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -2

Query: 165      QCEAHLGHVFPDGPGPNGQRFCINSVALKFKP 196
                QC AHLGH+F DGP P G+R+CINS +L F P
Sbjct: 10625997 QCGAHLGHIFDDGPRPTGKRYCINSASLSFTP 10625902



 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = -1

Query: 62       CELPLAKSEWQKKLTPEQFYVTREKGTE 89
                C++  ++ E +K+LTP Q++VT+EKGTE
Sbjct: 10742632 CKVVFSQQELRKRLTPLQYHVTQEKGTE 10742549



 Score = 33.1 bits (74), Expect = 7.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 92       FSGIYLNNKEAGMYHCVCCDSPLF 115
                F G Y ++K+ G+Y CV C +PLF
Sbjct: 10740920 FEGEYTHHKDPGIYKCVVCGTPLF 10740849


>gb|JH418216.1| Mustela putorius furo unplaced genomic scaffold scaffold00244, whole genome
               shotgun sequence
          Length = 2628292

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 103     GMYHCVCCDSPLFSSEKKYCSGTGWPSFSE 132
               G+Y C  C   LFSS  KY   + WP+F+E
Sbjct: 1076206 GVYVCAKCGYELFSSRSKYAHSSPWPAFTE 1076295



 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 160     EVVCKQCEAHLGHVF-PDGPGPNGQRFCINSVALKFKPR 197
               +V C +C   LGH F  DGP P   RF I S +LKF P+
Sbjct: 1076688 QVSCGRCGNGLGHEFLNDGPKPGQSRF*IFSSSLKFIPK 1076804


>gb|JH418008.1| Mustela putorius furo unplaced genomic scaffold scaffold00036, whole genome
               shotgun sequence
          Length = 14493738

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 101     EAGMYHCVCCDS-PLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSART 159
               ++G  +C+C  S P  S+ +   SG G+ +F E H  SG       +L    T LG AR 
Sbjct: 9990708 QSGGIYCLCLTSHPSPSAGRGRGSGGGFAAFRETHTGSGGSSLRPSLLAAA-THLGPAR- 9990881

Query: 160     EVVCKQCEAHLGHVFPDGPGPNGQRFCI 187
                  C++C A      P GP       C+
Sbjct: 9990882 --CCRRCSA---PSLPPGPSAAAACACL 9990950


>gb|JH418333.1| Mustela putorius furo unplaced genomic scaffold scaffold00361, whole
              genome shotgun sequence
          Length = 891697

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 22/59 (37%), Positives = 25/59 (42%)
 Frame = +3

Query: 121    YCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPG 179
              Y SG GW S  E+H   GS  S    +R      G  R   +    EAH G V  DG G
Sbjct: 797385 YSSGAGWVSLDESHLPPGSGLS----IRVKWMDSGGQRASCLHSSFEAHSGGVDMDGEG 797549


>gb|JH418239.1| Mustela putorius furo unplaced genomic scaffold scaffold00267, whole
              genome shotgun sequence
          Length = 2097789

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 153    SLGSARTEVVCKQCEAHLGHVF--PDGPGPNGQRFCINSVALKFKPR 197
              + G   +E+ C Q    LG V   P GPGP+G+R  +++    F  R
Sbjct: 109798 TFGKESSEITCSQSTCSLGRVPFPPPGPGPSGERKAVSTPGGSFHDR 109938


>gb|JH418142.1| Mustela putorius furo unplaced genomic scaffold scaffold00170, whole genome
               shotgun sequence
          Length = 4386756

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 27/132 (20%)
 Frame = -1

Query: 62      CELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNN-----------KEAGMYHCVCC 110
               C+ P++ + W K+L P+Q  VT      PP +G+   +              G    VC 
Sbjct: 1837398 CKRPVSATGWHKRLHPKQSEVTSSLDLCPPGAGLSFCSLPEEPVGV*PMSSGGRSR*VCN 1837219

Query: 111     DSPLF------SSEKKYC----------SGTGWPSFSEAHGTSGSDESHTGILRRLDTSL 154
                 PLF      S++   C          +G G P  +   G +   +   G+    D  +
Sbjct: 1837218 VLPLFKGSNGASNDADACARNRWRPAETAGCGHPPVTRRQGAAPGVQGPVGVNTSQDMQV 1837039

Query: 155     GSARTEVVCKQC 166
               G      VCK C
Sbjct: 1837038 G------VCKPC 1837021


>gb|JH418094.1| Mustela putorius furo unplaced genomic scaffold scaffold00122, whole
              genome shotgun sequence
          Length = 6602453

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
 Frame = -3

Query: 74     KLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPL-----------FSSEKKYC 122
              KL P+ +   REK  E P SG++   K+    + + C   L           FSS K YC
Sbjct: 452928 KLPPDLWSPWREKRPEEPVSGVWDPKKQET*QNVLLCQMTLWPKLQKMQIDQFSSSKIYC 452749

Query: 123    SGTGWPSF 130
              S  G+  F
Sbjct: 452748 SKAGY*EF 452725


>gb|JH418083.1| Mustela putorius furo unplaced genomic scaffold scaffold00111, whole genome
               shotgun sequence
          Length = 6925615

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +1

Query: 114     LFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGS-ARTEVVCKQCEAHLGH 172
               +F + K +  G  W + S  HGT G    H+ ++ R    LGS    E  C  C   L  
Sbjct: 2421412 IFEN*KNFRQGGAWVAQSVKHGTPGFSSGHSLMVVRSSPELGSMLGVETTCDCCSLPLS- 2421588

Query: 173     VFPDGP 178
               V P  P
Sbjct: 2421589 VCPSSP 2421606


>gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold scaffold00003, whole genome
                shotgun sequence
          Length = 31471863

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 87       GTEPPFSGIYLNNKEAGMYHCVCCDSPLFS 116
                GTEPP S ++L  + A  YH   C SPL +
Sbjct: 14004404 GTEPPVSFLFLEVRRAS*YHVTQCPSPLIT 14004493


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,090,005
Number of Sequences: 4245
Number of extensions: 9337729
Number of successful extensions: 43812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 33122
Number of HSP's gapped (non-prelim): 24403
length of query: 199
length of database: 800,060,566
effective HSP length: 123
effective length of query: 76
effective length of database: 799,538,431
effective search space: 60764920756
effective search space used: 60764920756
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)
