TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418169.1| Mustela putorius furo unplaced genomic scaffold s...    64   1e-09
gb|JH418081.1| Mustela putorius furo unplaced genomic scaffold s...    62   6e-09
gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold s...    32   7.0  
gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold s...    31   9.1  
gb|JH417978.1| Mustela putorius furo unplaced genomic scaffold s...    31   9.1  

>gb|JH418169.1| Mustela putorius furo unplaced genomic scaffold scaffold00197, whole genome
               shotgun sequence
          Length = 3598753

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 27/35 (77%), Positives = 33/35 (94%)
 Frame = -3

Query: 1       MVYISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVV 35
               + ++S GQVLDSR+QSPWR+SF+TDFFWGIAEFVV
Sbjct: 2427602 LFFLSVGQVLDSRSQSPWRLSFITDFFWGIAEFVV 2427498


>gb|JH418081.1| Mustela putorius furo unplaced genomic scaffold scaffold00109, whole genome
               shotgun sequence
          Length = 7038172

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 34/48 (70%), Positives = 37/48 (77%)
 Frame = -2

Query: 1       MVYISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLLQQDVKK 48
               MV ISNGQVLDS+ QSPWR S +TD F GIAEF  F F  LLQQ+VKK
Sbjct: 5870190 MVSISNGQVLDSQGQSPWR*SLVTDSF*GIAEF-WFCFSRLLQQEVKK 5870050


>gb|JH418017.1| Mustela putorius furo unplaced genomic scaffold scaffold00045, whole genome
               shotgun sequence
          Length = 12738967

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 18      WRVSFLTDFFWGIAEFVVFFFKTLL 42
               W+ SFL +FFW    +  FFFK L+
Sbjct: 2467310 WKCSFLFNFFWKSLRWCYFFFKPLI 2467384


>gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold scaffold00132, whole
              genome shotgun sequence
          Length = 6141178

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +2

Query: 27     FWGIAEFVVFFFKTLLQQDVK 47
              FWG+A+F+   FK+++++DVK
Sbjct: 283601 FWGLAQFIASVFKSVIKRDVK 283663


>gb|JH417978.1| Mustela putorius furo unplaced genomic scaffold scaffold00006, whole genome
                shotgun sequence
          Length = 28371801

 Score = 31.2 bits (69), Expect = 9.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 13       RNQSPWRVSFLTDFFWGIAEFVVFFFKTLL 42
                RN SP +V  L  FF+    F VFFFK L+
Sbjct: 19903729 RNSSPSQVKMLKSFFFFFFFFTVFFFKFLI 19903640


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,143,763
Number of Sequences: 4245
Number of extensions: 1516983
Number of successful extensions: 17183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 15755
Number of HSP's gapped (non-prelim): 4843
length of query: 94
length of database: 800,060,566
effective HSP length: 69
effective length of query: 25
effective length of database: 799,767,661
effective search space: 19994191525
effective search space used: 19994191525
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 69 (31.2 bits)
