TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000104_1.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Mus musculus # Complete
         (186 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold s...   176   6e-43
gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold s...   114   3e-24
gb|JH418089.1| Mustela putorius furo unplaced genomic scaffold s...    49   1e-12
gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold s...    58   2e-07
gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold s...    57   5e-07
gb|JH418038.1| Mustela putorius furo unplaced genomic scaffold s...    43   0.008
gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold s...    43   0.008
gb|JH418052.1| Mustela putorius furo unplaced genomic scaffold s...    33   8.0  

>gb|JH417975.1| Mustela putorius furo unplaced genomic scaffold scaffold00003, whole genome
               shotgun sequence
          Length = 31471863

 Score =  176 bits (445), Expect = 6e-43
 Identities = 83/99 (83%), Positives = 91/99 (91%)
 Frame = +3

Query: 42      YRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIEN 101
               +   VSLVVNVASECGFTDQ+YRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD+N+EIE+
Sbjct: 3095853 FGAQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 3096032

Query: 102     FARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTSGKEPT 140
               FARRTYSVSFPMFSK+AVTGTGAHPAFKYL + S   P+
Sbjct: 3096033 FARRTYSVSFPMFSKVAVTGTGAHPAFKYLIRES*SFPS 3096149



 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 43/54 (79%), Positives = 48/54 (88%)
 Frame = +2

Query: 133     QTSGKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLILRKREDL 186
               +TSGKEPTWNFWKYLV PDGKVVGAWDPTV V EI+P+IT  V KLIL+KRE+L
Sbjct: 3097763 ETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKREEL 3097924



 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 28/30 (93%), Positives = 29/30 (96%)
 Frame = +2

Query: 19      QSEQDFYDFKAVNIRGKLVSLEKYRGSVSL 48
               Q EQDFYDFKAVNIRGKLVSLEKYRGSVS+
Sbjct: 3091046 QREQDFYDFKAVNIRGKLVSLEKYRGSVSV 3091135


>gb|JH417989.1| Mustela putorius furo unplaced genomic scaffold scaffold00017, whole genome
                shotgun sequence
          Length = 20568574

 Score =  114 bits (284), Expect = 3e-24
 Identities = 50/86 (58%), Positives = 68/86 (79%)
 Frame = -3

Query: 46       VSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARR 105
                V+LVVNVAS+C  TD+NY ALQ+L ++ GP HF+VLAFPCNQFG+ EP  ++E+ +FAR 
Sbjct: 14158757 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARS 14158578

Query: 106      TYSVSFPMFSKIAVTGTGAHPAFKYL 131
                 Y V+FP+F KI + G+ A PAF++L
Sbjct: 14158577 NYGVTFPIFHKIKILGSEADPAFRFL 14158500



 Score = 69.7 bits (169), Expect = 6e-11
 Identities = 29/56 (51%), Positives = 40/56 (71%)
 Frame = -1

Query: 131      LTQTSGKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLILRKREDL 186
                +  +S KEP WNFWKYLV+P+G+VV  W P  P+  I+P I   + ++ILRK+EDL
Sbjct: 14154802 ILDSSKKEPRWNFWKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQMILRKKEDL 14154635


>gb|JH418089.1| Mustela putorius furo unplaced genomic scaffold scaffold00117, whole genome
               shotgun sequence
          Length = 6689181

 Score = 48.9 bits (115), Expect(2) = 1e-12
 Identities = 25/49 (51%), Positives = 29/49 (59%)
 Frame = -1

Query: 43      RGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 91
               RG V +V NVAS+ G TD NY  L  L          +LAFPCNQFG+Q
Sbjct: 6130815 RGFVCIVTNVASQ*GKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQ 6130669



 Score = 46.6 bits (109), Expect(2) = 1e-12
 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -3

Query: 84      PCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYL-TQTSGKEPTWN 142
               PC+    QEP +N EI+ FA   Y+V F MFSKI V G  AHP +K++  Q  G+     
Sbjct: 6130567 PCSP---QEPGSNAEIKEFAAG-YNVKFDMFSKICVNGDDAHPLWKWMKVQPKGRGIL-- 6130406

Query: 143     FWKYLVDPDGKVVGAW 158
                        GK VG W
Sbjct: 6130405 ---------GKCVGGW 6130385


>gb|JH418202.1| Mustela putorius furo unplaced genomic scaffold scaffold00230, whole genome
               shotgun sequence
          Length = 2968724

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 30/58 (51%), Positives = 37/58 (63%)
 Frame = -3

Query: 34      GKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 91
               G+ +SL   RG V L+ NVAS  G T ++Y  + +LQR LGP    VL FPCNQFG Q
Sbjct: 1597749 GEPLSLGSLRGKVLLIENVASL*GTTVRDYTEMNELQRRLGPRGLVVLGFPCNQFGHQ 1597576



 Score = 40.0 bits (92), Expect = 0.050
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 28/109 (25%)
 Frame = -1

Query: 91      QEPDTNREIENFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLTQT----------- 134
               QE   N EI N  +       +  +F +F K  V G  AHP F +L +            
Sbjct: 1597292 QENAKNDEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLREALPAPSDDATAL 1597113

Query: 135     ------------SGKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171
                              +  WNF K+LV PDG  V  +    P  +I+P I
Sbjct: 1597112 MTDPKFIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTIDIEPDI 1596966


>gb|JH418204.1| Mustela putorius furo unplaced genomic scaffold scaffold00232, whole genome
               shotgun sequence
          Length = 2925994

 Score = 56.6 bits (135), Expect = 5e-07
 Identities = 30/70 (42%), Positives = 40/70 (57%)
 Frame = -1

Query: 22      QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVL 81
               + FYD  AV++ G+ V    +RG   L+ NVAS  G T +++  L +LQ    P    VL
Sbjct: 2238934 KSFYDLSAVSLDGEKVDFNTFRGRAVLIENVASL*GTTTRDFTQLNELQCRF-PRRLVVL 2238758

Query: 82      AFPCNQFGQQ 91
                FPCNQFG Q
Sbjct: 2238757 GFPCNQFGHQ 2238728



 Score = 37.4 bits (85), Expect = 0.32
 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
 Frame = -1

Query: 88      FGQQEPDTNREIENFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYL----------- 131
               F  QE   N EI N  +       +  +F +  K  V G   HP F YL           
Sbjct: 2236414 FLPQENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDP 2236235

Query: 132     ------------TQTSGKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171
                           +     +  WNF K+L+ P+G+    +  T P   I+P I
Sbjct: 2236234 FTLMTDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDI 2236079


>gb|JH418038.1| Mustela putorius furo unplaced genomic scaffold scaffold00066, whole genome
               shotgun sequence
          Length = 10208665

 Score = 42.7 bits (99), Expect = 0.008
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +2

Query: 66      LQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREI 99
               L  LQ +L P    +L FPCNQFG+QEP  N EI
Sbjct: 3609344 LNALQEELEPFGLVILGFPCNQFGKQEPGENSEI 3609445


>gb|JH417983.1| Mustela putorius furo unplaced genomic scaffold scaffold00011, whole
              genome shotgun sequence
          Length = 25197298

 Score = 42.7 bits (99), Expect = 0.008
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = +2

Query: 66     LQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREI 99
              L  LQ +L P    VL FPCNQFG+QEP  N EI
Sbjct: 556361 LNALQEELKPFGVVVLGFPCNQFGKQEPGKNSEI 556462



 Score = 42.0 bits (97), Expect = 0.013
 Identities = 20/34 (58%), Positives = 22/34 (64%)
 Frame = -1

Query: 66     LQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREI 99
              L  LQ +L P    VL FPCNQFG+QEP  N EI
Sbjct: 518449 LNALQEELMPVGLVVLGFPCNQFGKQEPGDNSEI 518348



 Score = 37.0 bits (84), Expect = 0.42
 Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -2

Query: 25     YDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQ 61
              YD++A+ + G +L+  ++Y G + L+VNVA+ CG T Q
Sbjct: 521202 YDYEALTLNGNELIQFKQYAGKLILLVNVATYCGLTAQ 521089



 Score = 35.0 bits (79), Expect = 1.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 141    WNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITE 173
              WNF K+LV PDG  V  W    PV+ +K  I E
Sbjct: 558401 WNFEKFLVGPDGVPVMRWFHKAPVSAVKADILE 558499



 Score = 34.7 bits (78), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 141    WNFWKYLVDPDGKVVGAWDPTVPVAEIKPRITE 173
              WNF K+LV PDG  V  W    PV  ++  I E
Sbjct: 516471 WNFEKFLVGPDGVPVMRWSHRTPVGAVRADILE 516373


>gb|JH418052.1| Mustela putorius furo unplaced genomic scaffold scaffold00080, whole genome
               shotgun sequence
          Length = 9166488

 Score = 32.7 bits (73), Expect = 8.0
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = -3

Query: 114     FSKIAVTGTGAHPAFKYLTQTSGKEPTWNFWKYLVDPDGKVVGAWDPTV 162
               FS I  T T A+ A+ YLT  SG      FW    DP+G  V  W  +V
Sbjct: 3465733 FSYIFQTYTEANTAYLYLTWCSGTRRDGGFW-VTGDPEGPRVALWSHSV 3465590


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,849,576
Number of Sequences: 4245
Number of extensions: 6900427
Number of successful extensions: 27291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 24535
Number of HSP's gapped (non-prelim): 9051
length of query: 186
length of database: 800,060,566
effective HSP length: 122
effective length of query: 64
effective length of database: 799,542,676
effective search space: 51170731264
effective search space used: 51170731264
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
