TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 
         (90 letters)

Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/genome
.fa 
           4245 sequences; 2,400,181,698 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|JH418181.1| Mustela putorius furo unplaced genomic scaffold s...    49   3e-05
gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold s...    37   0.17 
gb|JH418035.1| Mustela putorius furo unplaced genomic scaffold s...    33   2.4  
gb|JH418009.1| Mustela putorius furo unplaced genomic scaffold s...    33   2.4  
gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold s...    32   4.1  
gb|JH418004.1| Mustela putorius furo unplaced genomic scaffold s...    32   4.1  
gb|JH417987.1| Mustela putorius furo unplaced genomic scaffold s...    32   5.3  
gb|JH418029.1| Mustela putorius furo unplaced genomic scaffold s...    32   7.0  

>gb|JH418181.1| Mustela putorius furo unplaced genomic scaffold scaffold00209, whole genome
               shotgun sequence
          Length = 3329659

 Score = 49.3 bits (116), Expect = 3e-05
 Identities = 23/47 (48%), Positives = 30/47 (63%)
 Frame = -2

Query: 33      RSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGL 79
               R+ S    F P++     S+RLT F+ +KG GCKVPQ+ L KLLE L
Sbjct: 1487520 RTMSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESL 1487380


>gb|JH417973.1| Mustela putorius furo unplaced genomic scaffold scaffold00001, whole genome
                shotgun sequence
          Length = 38702089

 Score = 37.0 bits (84), Expect = 0.17
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 29       WSAGRSFSN--YRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKL--LEGLTRPAL 84
                W+AG   S   +R F   +LGFS SW L+  S  +  G KVP   LLK+   EGL  P  
Sbjct: 32370258 WAAGSRTSEKGWRHFRITSLGFSSSWGLSLASHPRPLGPKVP-HYLLKIGPREGLATPLS 32370434

Query: 85       QPP 87
                 PP
Sbjct: 32370435 LPP 32370443


>gb|JH418035.1| Mustela putorius furo unplaced genomic scaffold scaffold00063, whole genome
                shotgun sequence
          Length = 10479592

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 21       EGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKG 62
                EGS+ PAGWS  ++F       PQ     PSW L  +   +G
Sbjct: 10110201 EGSIPPAGWS--QNFHKRPAQSPQPTSLCPSWSLIEWGSFQG 10110082


>gb|JH418009.1| Mustela putorius furo unplaced genomic scaffold scaffold00037, whole genome
                shotgun sequence
          Length = 14230568

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -3

Query: 43       PQTLGFSPSWRLTSFSGMKGUGCKVPQETLLKLLEGLTRPAL 84
                P T   S +W L SFS ++G GC  P E   +  EG+T  +L
Sbjct: 10957542 PGTS*VSMAWLLGSFSRLEGRGCLPPHECAFRGSEGVTSKSL 10957417


>gb|JH418104.1| Mustela putorius furo unplaced genomic scaffold scaffold00132, whole genome
               shotgun sequence
          Length = 6141178

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -1

Query: 26      PAGWSAGRSFSNYRPFEPQTLGFSP 50
               P GW A RSFS +RP++ Q LG SP
Sbjct: 3787597 PGGW-ASRSFSCFRPWKEQGLGMSP 3787526


>gb|JH418004.1| Mustela putorius furo unplaced genomic scaffold scaffold00032, whole genome
               shotgun sequence
          Length = 15264983

 Score = 32.3 bits (72), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 25      GPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKVPQ 69
               GP GWS+G S   +R F PQT   +P W +   +   G G   P+
Sbjct: 5324539 GPQGWSSGCSGVPWRLFRPQT---APLWLVLDSTPPMGSGAPQPR 5324414


>gb|JH417987.1| Mustela putorius furo unplaced genomic scaffold scaffold00015, whole genome
                shotgun sequence
          Length = 21117847

 Score = 32.0 bits (71), Expect = 5.3
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 25       GPAGWSAGR--SFSNYRPFEPQTLGFSPSWRLTSFSGMKGUGCKV--PQETLLKLLEGLT 80
                GPAGW AGR   F +  P      GFS SW   +  G +G G ++  P E LL     + 
Sbjct: 19693343 GPAGWEAGRIPIFISSCP-----SGFSVSWH*LNPGGSQGAGVQLMQPMEVLLSGPRRVL 19693507

Query: 81       RPALQ 85
                R A Q
Sbjct: 19693508 RGAAQ 19693522


>gb|JH418029.1| Mustela putorius furo unplaced genomic scaffold scaffold00057, whole genome
               shotgun sequence
          Length = 11383723

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 20      AEGSLGPAGWSAGRSFSNYRPFEPQTLGFSPSWRLTSFSG 59
               A+GS GPAGW  G S + +  F       S  W +  FSG
Sbjct: 2019751 AKGSTGPAGWPRGASSATFPSFST-----SVKWVVAQFSG 2019855


  Database: /cursos/BI/genomes/project_2013/Mustela_putorius_furo/geno
  me.fa
    Posted date:  Oct 24, 2012  8:21 PM
  Number of letters in database: 2,400,181,698
  Number of sequences in database:  4245
  
Lambda     K      H
   0.315    0.134    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,170,701
Number of Sequences: 4245
Number of extensions: 3366042
Number of successful extensions: 21221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 14283
Number of HSP's gapped (non-prelim): 13216
length of query: 90
length of database: 800,060,566
effective HSP length: 65
effective length of query: 25
effective length of database: 799,784,641
effective search space: 19994616025
effective search space used: 19994616025
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
