TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|8923460|ref|NP_060316.1| tRNA selenocysteine 1-associated protein 1 [Homo sapiens] (287 letters) Database: P.capsici/genome.fa 917 sequences; 64,023,748 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PHYCAscaffold_11 101 1e-21 PHYCAscaffold_33 65 1e-10 PHYCAscaffold_1 55 9e-08 PHYCAscaffold_44 50 3e-06 PHYCAscaffold_42 47 3e-05 PHYCAscaffold_14 37 0.032 PHYCAscaffold_47 35 0.094 PHYCAscaffold_23 35 0.094 PHYCAscaffold_21 35 0.16 PHYCAscaffold_18 34 0.21 PHYCAscaffold_105 33 0.47 PHYCAscaffold_43 32 0.79 PHYCAscaffold_6 32 0.79 PHYCAscaffold_27 30 3.9 PHYCAscaffold_31 30 5.1 PHYCAscaffold_20 29 8.8 >PHYCAscaffold_11 Length = 1076090 Score = 101 bits (251), Expect = 1e-21 Identities = 72/235 (30%), Positives = 108/235 (45%), Gaps = 65/235 (27%) Frame = -3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMS------------------------------- 32 +LWMGD++ + DE FI+ F T G + Sbjct: 724056 TLWMGDIQMHWDETFIASLFTTAGLFSRTFGVLLNEIT*GLILILIYYCYYFLLEHAVEQ 723877 Query: 33 --VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG------------------ 72 +K+IR+++TG PAGY F+EF A++ L NG+ + Sbjct: 723876 PVIKLIRDKVTGYPAGYGFLEFPTQQGAQQVLEAYNGQLIRTNHRVFAVFNVL*CFFSEW 723697 Query: 73 -------------ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKV 119 A RF++N+ G++ + S ++S+FVGDL PDV D +L F Sbjct: 723696 NNI**CSVCVVRLANTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLSTFNAR 723517 Query: 120 YPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 173 + S RG KVV+D T +SKG+GFV+F + E +AL G V S+P+R+SVA Sbjct: 723516 FTSVRGAKVVIDPITRMSKGFGFVRFGSKEEADQALQTMNG-VYCSSRPMRVSVA 723355 Score = 29.6 bits (65), Expect = 5.1 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = -3 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 ++++G L+P E+ + F +GE ++SVK+ R G FV++ AE + Sbjct: 723288 TVFVGGLDPSTTEDELRGRFGALGE-IVSVKVPPGR------GCGFVQYTTKEAAEVAIS 723130 Query: 64 KINGKPLPG 72 ++NG + G Sbjct: 723129 QMNGTVVNG 723103 >PHYCAscaffold_33 Length = 640966 Score = 64.7 bits (156), Expect = 1e-10 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 1/165 (0%) Frame = +1 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 ASL++GD+ P + E + F +G V S+++ R+ +T GY +V F ++A AE+ L Sbjct: 54310 ASLYVGDIHPDVTEALLFEIFNAVGP-VASIRVCRDAVTRRSLGYAYVNFHNVADAERAL 54486 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122 +N + G ++ ++ S ++FV +L +D+ LY+ F ++ + Sbjct: 54487 DTMNFTSIKGVP----CRIMWSQRDPSLRKSGVGNIFVKNLDTSIDNKALYDTF-SLFGN 54651 Query: 123 CRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 166 KV +D T G SKGYG+V + A+ + G + G++ Sbjct: 54652 ILSCKVAIDHTNGNSKGYGYVHYETAEAANEAIAKINGMLIAGTE 54786 >PHYCAscaffold_1 Length = 2170955 Score = 55.5 bits (132), Expect = 9e-08 Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Frame = +2 Query: 85 TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVK 143 T + PDN ++ LF GDL +V D +L F K Y S + +VV D+ T S+GYGFV Sbjct: 403577 TLDEWPDN--DFRLFCGDLGNEVSDELLAHSFSK-YASFQRARVVRDKMTHKSRGYGFVS 403747 Query: 144 FTDELEQKRALTECQGAVGLGSKPVRLS 171 F D + +AL E G +G++PV+LS Sbjct: 403748 FGDPFDCAKALREMNGKY-IGNRPVKLS 403828 >PHYCAscaffold_44 Length = 536020 Score = 50.4 bits (119), Expect = 3e-06 Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 1/177 (0%) Frame = +2 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A++++G+L+ + E + G +V +V + R++++G Y FVEF AE + Sbjct: 342563 ATVYVGNLDDRVTEELLWELMLQAG-SVCNVHMPRDKVSGAHQNYGFVEFRTEECAEYAV 342739 Query: 63 HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122 +N L G K ++ A+ ++ + +LF+G+L +VD+ +LY+ F Sbjct: 342740 KVLNMIQLFG----KVIRVKKASNVRK-NLDVGANLFLGNLDTEVDEKLLYDTFSAFGGI 342904 Query: 123 CRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178 K++ D T S+G+GFV + D E EC L ++ V + A K S Sbjct: 342905 IETPKIMRDPDTKASRGFGFVSY-DSFEAADLAIECMHGQYLCNRQVVVQYAFKKDS 343072 >PHYCAscaffold_42 Length = 526029 Score = 47.0 bits (110), Expect = 3e-05 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 3/180 (1%) Frame = +3 Query: 5 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 64 L++G + M+E+ + G + + IIR+++TG G F + AEK + + Sbjct: 477588 LFVGQVPRTMEEDDLRPVLEVFGP-LEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQE 477764 Query: 65 INGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR 124 ++ K P L Q S E+ LF+G + D+ + E F +++ + Sbjct: 477765 LHNKV---TLPQSINPLQVRPAEGQAGASQEHKLFIGMIPKTADEAAIREVF-ELFGTIE 477932 Query: 125 GGKVVL-DQTGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPVRLSVAIPKASRVK 181 ++ TG SKG F+KF + A+ + G V + G+ P+ + A + R++ Sbjct: 477933 EVYILRHPATGQSKGCAFLKFKERSSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQ 478112 Score = 33.5 bits (75), Expect = 0.36 Identities = 19/65 (29%), Positives = 36/65 (55%) Frame = +3 Query: 3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 A+L++ L + + ++ AFA G TV+S K+ +++TG G+ FV + A+ + Sbjct: 478515 ANLFIYHLPHDLTDADLATAFAPFG-TVISAKVYMDKITGESKGFGFVSYDSADAADAAI 478691 Query: 63 HKING 67 +NG Sbjct: 478692 ASMNG 478706 Score = 29.6 bits (65), Expect = 5.1 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Frame = +3 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALT 155 +LF+ L D+ D L F + + KV +D+ TG SKG+GFV + D + A Sbjct: 478518 NLFIYHLPHDLTDADLATAFAP-FGTVISAKVYMDKITGESKGFGFVSY-DSADAADAAI 478691 Query: 156 ECQGAVGLGSKPVRL 170 +G+K +++ Sbjct: 478692 ASMNGFQIGTKRLKV 478736 >PHYCAscaffold_14 Length = 1100894 Score = 37.0 bits (84), Expect = 0.032 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = +1 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKF---TDELE 149 +FV L VDD LYE F K + KVV DQ +G S+G+GFV F TD L+ Sbjct: 599995 VFVAGLPLHVDDDALYEKF-KQFGEMHQSKVVYDQKSGRSRGFGFVTFCEYTDALD 600159 Score = 34.7 bits (78), Expect = 0.16 Identities = 24/92 (26%), Positives = 40/92 (43%) Frame = +2 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 SL + +L P + + AF+ ++ V I ++ + P G+ F+EFAD Sbjct: 844028 SLLVRNLAPETTADELRHAFSRRSGDILDVYIPKDYNSNQPRGFAFIEFADAEVGRDVKF 844207 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQPDNSPE 95 K++ K L G A + KQ SP+ Sbjct: 844208 KMDRKQLGGREIA-------VLFAKQSRKSPQ 844282 >PHYCAscaffold_47 Length = 556112 Score = 35.4 bits (80), Expect = 0.094 Identities = 18/59 (30%), Positives = 33/59 (55%) Frame = -3 Query: 35 IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNS 93 ++ +R TG P GY F E+AD ATA + +NG + G + ++++A G + ++ Sbjct: 472557 LVTDRETGKPKGYGFCEYADGATALSAMRNLNGYEING----RNLRVDFADGGDKSSSA 472393 >PHYCAscaffold_23 Length = 821542 Score = 35.4 bits (80), Expect = 0.094 Identities = 21/87 (24%), Positives = 42/87 (48%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63 +L++G L E + R F+ G + ++++R++ T P GY F+EF + E+ Sbjct: 276352 TLFVGRLSFDTTEETLRRIFSDYG-AIRRLRLVRDKKTDKPKGYAFIEFEQERSFERAYR 276176 Query: 64 KINGKPLPGATPAKRFKLNYATYGKQP 90 + + GAT ++ + G +P Sbjct: 276175 HAHRSVIDGATILVDYERSRVMKGWKP 276095 Score = 35.4 bits (80), Expect = 0.094 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -2 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156 +LFVG ++ + + L F + Y + ++V D G S+GYGFV++ E + K A Sbjct: 28464 TLFVGRISYETTEQQLRHEFEQ-YGPVKSVRLVEDPEGKSRGYGFVEYEKEADMKNAYKY 28288 Query: 157 CQG 159 G Sbjct: 28287 ADG 28279 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = -2 Query: 73 ATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ 132 ATPA R + + + +LF+ +L+ + L EFF + + + +VV ++ Sbjct: 652947 ATPAPR---------EDTEAQRDRTLFIRNLSFQTSEDGLREFF-QTFGAVEYARVVYEK 652798 Query: 133 -TGVSKGYGFVKF 144 +G+SKG GFV+F Sbjct: 652797 GSGLSKGVGFVRF 652759 >PHYCAscaffold_21 Length = 930814 Score = 34.7 bits (78), Expect = 0.16 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = -3 Query: 2 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 61 +++L++G+L + E I F+ +G V V + +R P G+CFVE++ + AE C Sbjct: 246104 SSTLYVGNLSFFTSEAQIYELFSRVGH-VKRVIMGLDRFKKTPCGFCFVEYSTHSEAEAC 245928 >PHYCAscaffold_18 Length = 984210 Score = 34.3 bits (77), Expect = 0.21 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 5/134 (3%) Frame = +2 Query: 16 ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 75 E + FA GE + ++N G +G FV FA E L ++G+ G Sbjct: 474014 EEEVKEHFAGCGEVTAARIPLQN---GRSSGTAFVTFATPEAVEAGL-AMDGQDFGG--- 474172 Query: 76 AKRFKLNYATYGKQPDNSPE--YSLFVGDLTPDVDDGMLYEFFVKV--YPSCRGGKVVLD 131 + K+ A D PE S+F+G+L DVD+ + E F + SCR + D Sbjct: 474173 -RWMKIRTAEKKNMFDEKPEGCTSVFIGNLAWDVDENTIRESFGECGEILSCR---LATD 474340 Query: 132 -QTGVSKGYGFVKF 144 +TG +G+G + F Sbjct: 474341 RETGEFRGFGHIDF 474382 >PHYCAscaffold_105 Length = 102149 Score = 33.1 bits (74), Expect = 0.47 Identities = 26/88 (29%), Positives = 40/88 (45%) Frame = +1 Query: 69 PLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKV 128 P P +P N + GK+ ++ YSLF+ D+ + L E F K Y S G V Sbjct: 54769 PAPEKSPK-----NKSGNGKEKEHKRFYSLFIRDVPSQTRENDLRELF-KGYGSIAGVNV 54930 Query: 129 VLDQTGVSKGYGFVKFTDELEQKRALTE 156 V +G+ FV + ++ + AL E Sbjct: 54931 V-----SQRGFAFVDYYEQESMRAALDE 54999 >PHYCAscaffold_43 Length = 531961 Score = 32.3 bits (72), Expect = 0.79 Identities = 24/76 (31%), Positives = 33/76 (43%) Frame = -3 Query: 91 DNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQ 150 D+ P LFV +L + L E Y + LD T KGYGFV F ++ Sbjct: 375329 DDKPTARLFVRNLPFTAVEEDL-EALCSAYGPVEEVHMPLDDTRRRKGYGFVLFRTTVDA 375153 Query: 151 KRALTECQGAVGLGSK 166 ++ALT G G + Sbjct: 375152 QKALTALNGMAFQGRR 375105 >PHYCAscaffold_6 Length = 1423605 Score = 32.3 bits (72), Expect = 0.79 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = -1 Query: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62 S+++G ++ + F + G T+ V I+ ++ TG P GY ++EFA E L Sbjct: 441405 SIYIGQVDYGSTPEELQALFQSCG-TINRVTILCDKFTGQPKGYAYIEFASRDAVESAL 441232 >PHYCAscaffold_27 Length = 705730 Score = 30.0 bits (66), Expect = 3.9 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 23/87 (26%) Frame = -1 Query: 97 SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-----------------------QT 133 +L+VG L V + LY FV P +G ++ D T Sbjct: 471010 ALYVGGLDSQVTEQGLYTAFVPFGP-IKGVQIPTDYNTRTWQILITGKEK*N*LVSIFHT 470834 Query: 134 GVSKGYGFVKFTDELEQKRALTECQGA 160 KG+GFV+F DE + + A+ GA Sbjct: 470833 ERGKGFGFVEFDDEADARAAIDNMDGA 470753 >PHYCAscaffold_31 Length = 686815 Score = 29.6 bits (65), Expect = 5.1 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = -3 Query: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTE 156 + V + +DD L E F + + + KVVLD + S+G+GFV FT + A+ Sbjct: 549821 IIVVGIPKTLDDAQLSELFSE-FGAVAEAKVVLDAASNTSRGFGFVTFTAGSAMRAAIKG 549645 Query: 157 CQGAVGLGSKPVRLSVAIPK 176 V L + + + +PK Sbjct: 549644 MNRKV-LQGRTLNVRQLVPK 549588 >PHYCAscaffold_20 Length = 899172 Score = 28.9 bits (63), Expect = 8.8 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -1 Query: 46 GYCFVEFADLATAEKCLHKINGKPLPGAT 74 G+CF+E+ D+ AE + +NG + T Sbjct: 560475 GFCFLEYEDVLAAESAVQVLNGTSMANRT 560389 Database: P.capsici/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 64,023,748 Number of sequences in database: 917 Lambda K H 0.317 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,291,725 Number of Sequences: 917 Number of extensions: 209202 Number of successful extensions: 887 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 742 Number of HSP's gapped (non-prelim): 326 length of query: 287 length of database: 21,341,249 effective HSP length: 104 effective length of query: 183 effective length of database: 21,245,881 effective search space: 3887996223 effective search space used: 3887996223 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.9 bits)