TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SelJ_tetraodon_nigroviridis (189 letters) Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_28 44 9e-05 contig_29 30 0.80 contig_25 30 0.80 contig_26 30 1.4 contig_36 28 3.0 contig_27 28 3.0 contig_15 28 3.0 contig_10 28 4.0 contig_32 28 5.2 contig_31 28 5.2 contig_23 28 5.2 contig_07 27 6.7 contig_33 27 8.8 contig_30 27 8.8 contig_06 27 8.8 >contig_28 Length = 1171725 Score = 43.5 bits (101), Expect = 9e-05 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +2 Query: 129 YVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKI 184 + Q V + GG TC R +GA LGA++G+ IP W S T ++ V A ++ Sbjct: 1030355 FAQGVAQAIRLGGPTCQRAMLVGALLGAKLGVRHIPMEWLSATADHKPVSTMALEV 1030522 >contig_29 Length = 1258350 Score = 30.4 bits (67), Expect = 0.80 Identities = 19/66 (28%), Positives = 27/66 (40%) Frame = +1 Query: 124 LTATNYVQAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKK 183 L TN Q R ++ GGC G+ +GA L + +G P + T R K Sbjct: 876142 LHCTNVSQGARPVLAVGGCADRTGASLGADLPPERTKQGFPKEGEAVTPRRVVAAVLTDK 876321 Query: 184 ITSHLQ 189 + LQ Sbjct: 876322 LRCELQ 876339 >contig_25 Length = 897883 Score = 30.4 bits (67), Expect = 0.80 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = -2 Query: 140 GGCTCSR--GSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKK 183 G C CSR GS + C G V L PA W++ S + + K+ Sbjct: 275859 GSCVCSRDHGSGVQCCSGYSVDLRLRPARWNAHPPSLRSCMYNEKE 275722 >contig_26 Length = 1058259 Score = 29.6 bits (65), Expect = 1.4 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 61 LESVIRQLRDPNRKQAQDLDQAVVGHIHQVK--ENLSKTPQELIPAVF 106 + S + L +P +++A DL +H+ K + +S+TP E++ +VF Sbjct: 430396 ISSAYQVLSNPEKRKAYDLGGVQAVRLHESKFGKFMSRTPSEIVQSVF 430539 >contig_36 Length = 2713248 Score = 28.5 bits (62), Expect = 3.0 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -2 Query: 133 VRDTMSCGGCTCSRGSFIGACLGAQVG 159 VRD M C GC C R F L +VG Sbjct: 531104 VRDAMPCSGCECQRS*FPMMALVFEVG 531024 Score = 27.7 bits (60), Expect = 5.2 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Frame = -2 Query: 142 CTCSRGSFIGACL-GAQVGLE-----GIPASWSSRTQRYESVLEHAKKITSHLQ 189 C C RGSF+ C+ G Q+ L IP + ++RT + ++ + K I + Q Sbjct: 1258580 CRCLRGSFLDCCMHGRQIPLHTRKS*RIPKARTARTMQTQAHKDVVKNIATASQ 1258419 Score = 27.7 bits (60), Expect = 5.2 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = +3 Query: 134 RDTMSCGGCTCSRGSFIGACLGAQVGLEGIP 164 R + GCTC+R S +G C E +P Sbjct: 2097321 RSSAELRGCTCARDSLLGTCTWGGKSSERLP 2097413 Score = 27.3 bits (59), Expect = 6.7 Identities = 21/66 (31%), Positives = 30/66 (45%) Frame = -1 Query: 33 NNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGHIHQVKE 92 ++ A VAE +A R L +L G DP + + QL +Q AV + E Sbjct: 2059869 SSPAVVAEAVAVLRVL---VLQGTDPVRISRLACQLTLDIMEQRITEPSAVATILWLTGE 2059699 Query: 93 NLSKTP 98 N+SK P Sbjct: 2059698 NISKHP 2059681 Score = 27.3 bits (59), Expect = 6.7 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -3 Query: 16 GKPEMLGRVEDAVRVTQNNDACVAETLAAARFLEHF 51 G+ EM GRVE+ V + + D + + A++ +HF Sbjct: 1102549 GEFEMTGRVENVVNFSASFDHRIVDGALGAKWFQHF 1102442 >contig_27 Length = 1024085 Score = 28.5 bits (62), Expect = 3.0 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Frame = +2 Query: 113 PGAFQAALHGVLTATNYVQAVRDTMSCGGCTCSRGSFIG-----ACLGAQVGLEGIPASW 167 P A A + ++TAT QA C CT S SF G A +GA L IP S+ Sbjct: 237743 PFASTAPMRSLITATYLSQASATLRCCSSCTLSLFSFTGTIREEALMGA--SLLNIPRSF 237916 >contig_15 Length = 618357 Score = 28.5 bits (62), Expect = 3.0 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = +3 Query: 12 AFYAGKPEMLGRVEDAVRVTQNNDACVAE 40 A +AG P+ L R+ DAV ++++NDA E Sbjct: 189330 ALWAGAPDKLRRLLDAVGMSKDNDAASEE 189416 >contig_10 Length = 558170 Score = 28.1 bits (61), Expect = 4.0 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 Query: 133 VRDTMSCGGCTCSRGSFIGACLG 155 VR SCGG C+RG G C+G Sbjct: 233146 VR*EKSCGGTECARGREGGTCVG 233078 >contig_32 Length = 1559911 Score = 27.7 bits (60), Expect = 5.2 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Frame = -1 Query: 139 CGGCTCSRGSFIGACLGAQVGLE------GIPASWSS 169 C GC S + IG C+G VG +P WS+ Sbjct: 644545 CKGCRRSSSTHIGICIGGSVGAALALQRLDLPLCWST 644435 >contig_31 Length = 1531288 Score = 27.7 bits (60), Expect = 5.2 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = +2 Query: 144 CSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180 C+R S + +CL G+PASW + L H Sbjct: 1084373 CARSSLLDSCLTRMRAAGGLPASWFQMNPFGHASLRH 1084483 >contig_23 Length = 783272 Score = 27.7 bits (60), Expect = 5.2 Identities = 15/42 (35%), Positives = 20/42 (47%) Frame = -2 Query: 139 CGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEH 180 CG T +RG C G + + G P S +S T R E+ H Sbjct: 513919 CGQSTAARGCVRAECKGGRTQIAGHPGS-ASTTTRLEASSSH 513797 Score = 27.3 bits (59), Expect = 6.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 132 AVRDTMSCGGCTCSRGSFIGACLGAQ 157 AVR SC C + SF G C+G Q Sbjct: 130466 AVRVMRSCSSCISNSTSFKGCCVGMQ 130389 >contig_07 Length = 604754 Score = 27.3 bits (59), Expect = 6.7 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = -3 Query: 135 DTMSCGGCTC-SRGSFIGACLGAQVGLEG 162 D SCGGC C S G+ G CL + + G Sbjct: 438774 DGCSCGGCRCGSGGAPAGPCLDGEETVSG 438688 >contig_33 Length = 1453978 Score = 26.9 bits (58), Expect = 8.8 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Frame = -1 Query: 135 DTMSCGGCTCSRGSFIG-ACLGAQVGLEG 162 DT C G C+RGS +G C+ V + G Sbjct: 1165429 DTQRCSGMRCARGSLLGRECIVCVVQVNG 1165343 >contig_30 Length = 1374157 Score = 26.9 bits (58), Expect = 8.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3 Query: 131 QAVRDTMSCGGCTCSRGSFIGACLGAQVGLEGIPASWSSRTQRYESV 177 +A +T + GC C+ A G+ G GIP SSR+ R + V Sbjct: 127200 EASSETYTKFGCKCA------ASTGSSAGRSGIPKRHSSRSPRTQPV 127322 >contig_06 Length = 529559 Score = 26.9 bits (58), Expect = 8.8 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 7/163 (4%) Frame = -3 Query: 32 QNNDACVAETLAAARFLEHFILNGPDPTALESVIRQLRDPNRKQAQDLDQAVVGH----I 87 Q D + L A +EH ++ + TA+ + L+D + +DLD V+ + Sbjct: 441912 QQRDGVHVDRLIA---VEHA*IHQAEDTAVAAAAEHLQDRPYEVVRDLDAVVLVRDEDVV 441742 Query: 88 HQVKENLSKTPQELIPAVFVNTUGLPGAFQAALHGVLTATNYVQAVRDTMSCGGCTC--- 144 V+ L E V V T L + + L A +V + GGC C Sbjct: 441741 RLVRPLLLVRRAEGRDDVGVGT--LQDRLRCRVESQLLAITFVFLA--AAAVGGCACRRS 441574 Query: 145 SRGSFIGACLGAQVGLEGIPASWSSRTQRYESVLEHAKKITSH 187 SR + G+ + A V + P + +R + V++ + + H Sbjct: 441573 SRNTSTGSMMSAVVPRKAWPHLHQASKRRQQVVVDGSPTLFVH 441445 Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa Posted date: Oct 4, 2011 6:44 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.319 0.132 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,931,294 Number of Sequences: 36 Number of extensions: 164511 Number of successful extensions: 1192 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 1046 Number of HSP's gapped (non-prelim): 397 length of query: 189 length of database: 10,814,999 effective HSP length: 94 effective length of query: 95 effective length of database: 10,811,615 effective search space: 1027103425 effective search space used: 1027103425 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)