TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig583  |  | 1 to 15375                                          28   7.1  
Lt_contig5308  |  | 1 to 2106                                          27   9.3  

>Lt_contig583  |  | 1 to 15375
          Length = 15375

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 121  RPLVLSFGSCTUPPFLYKL 139
            RPL+L F SC  PPFLY L
Sbjct: 4810 RPLLLPF-SCLAPPFLYSL 4863


>Lt_contig5308  |  | 1 to 2106
          Length = 2106

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -1

Query: 23   CAAILQMSMLKLLSFISPGRMRKIHMK--MGERSTMTQNPKFRYE-DWGPAFFSLAFIKT 79
            C AIL  S   LL+  SP  +   H+K  + +RS  TQ  +      WG   ++    + 
Sbjct: 1962 CTAILSYSSSHLLAHASPNILLSGHVKSSLEKRSAHTQRVRRSPNLVWGST*YTFIHTER 1783

Query: 80   L-FFVNWCSLGL 90
            L  F  W S GL
Sbjct: 1782 LRVFAEWRSCGL 1747


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,398,793
Number of Sequences: 7267
Number of extensions: 126488
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 476
length of query: 241
length of database: 10,532,946
effective HSP length: 97
effective length of query: 144
effective length of database: 9,828,047
effective search space: 1415238768
effective search space used: 1415238768
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)