TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...    30   1.2  
gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced ...    28   7.5  
gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced ...    27   9.8  

>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun sequence
          Length = 3408800

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -2

Query: 63      RYEDWGPAFFSLAFIKTL------FFVNWCSLGLEAFEGHAAPDSALITLDRQKTSV 113
               + ++  P F++++FI  L      FFVN C L ++         S +IT  R+KT +
Sbjct: 2394739 KVKEIAPKFYTISFIVLLATASLTFFVNGCILVVQMKRHDQKTQSTIITATRKKTKI 2394569



 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 15     YISAVLMVCAAILQMSMLKLLSFISPGRMRKIHMKMGER-STMTQNPKFRYEDW 67
              YIS  L+  +A+L  ++L  +S    G+  K+H+K     S    N   + +DW
Sbjct: 163058 YISLHLISFSALLNSTLLI*ISVCEMGKSNKLHLKFNVTISAQFGNSPIKEDDW 163219


>gi|328871053|gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_Dfasci-F-a-11f03.f1-5, whole genome shotgun
              sequence
          Length = 911335

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -1

Query: 101    SALITLDRQKTSVHRFLKGNRPLVLSFGSCTU-PPFLYKLDEFKQLVKDFSNVADFLIVY 159
              SA  T++R K    +F++ NR  +LS   C      L+KL  F    K+ S +       
Sbjct: 552007 SAAKTIERYKADTLQFVQSNR--LLSIFDCEFLTADLFKL-HFDTYCKETSILEVIEAFS 551837

Query: 160    LAEAHATDAWAFKNNVDI 177
                  H+ D W F+  +DI
Sbjct: 551836 HNNRHSRDTWLFRRVIDI 551783


>gi|328869574|gb|GL883020.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EJPB12P01AWP9W-5, whole genome shotgun
              sequence
          Length = 629417

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 102    ALITLDRQKTSVHRFLKGNRPLVLSFGSC 130
              + ++ DRQ T +  FLK NR +V+++  C
Sbjct: 123556 SFLSFDRQNTYIICFLKSNRCVVMTWSIC 123470


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,776,531
Number of Sequences: 25
Number of extensions: 102305
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 83
length of query: 241
length of database: 10,339,736
effective HSP length: 97
effective length of query: 144
effective length of database: 10,337,311
effective search space: 1488572784
effective search space used: 1488572784
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)