TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADNL01002587.1| Astrammina rara contig03062, whole genome sho...    23   4.8  
gb|ADNL01000445.1| Astrammina rara contig00490, whole genome sho...    23   4.8  

>gb|ADNL01002587.1| Astrammina rara contig03062, whole genome shotgun sequence
          Length = 1906

 Score = 23.5 bits (49), Expect = 4.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 166  DFLIIYIEEAHPSDGW 181
            + +I+Y+  +HPS  W
Sbjct: 1270 NLIIVYLNTSHPSSNW 1223


>gb|ADNL01000445.1| Astrammina rara contig00490, whole genome shotgun sequence
          Length = 943

 Score = 23.5 bits (49), Expect = 4.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 206 LQQGAPGCALVLDTMANSSSSAYGA 230
           +++G+  C    DT  NSSS  YGA
Sbjct: 295 VREGSRPCITGHDTRPNSSSVRYGA 369


  Database: /users/rg/didac/GENOMES/A.rara/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,274
Number of Sequences: 3231
Number of extensions: 7165
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 278
length of database: 483,365
effective HSP length: 73
effective length of query: 205
effective length of database: 247,502
effective search space: 50737910
effective search space used: 50737910
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)