TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.286 of Sphaeroforma arctica JP610                           32   1.6  
supercont1.1093 of Sphaeroforma arctica JP610                          31   2.8  
supercont1.9041 of Sphaeroforma arctica JP610                          30   4.8  
supercont1.1436 of Sphaeroforma arctica JP610                          30   8.1  

>supercont1.286 of Sphaeroforma arctica JP610
          Length = 95035

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/90 (28%), Positives = 39/90 (43%)
 Frame = -3

Query: 22   CLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDA 81
            C+F  L DS +LL  V+  +  + S       + T  G+ CVW   LL  ++     ED 
Sbjct: 6311 CVFFLL-DSFVLLGRVIGCVLETWSCE----YVCTRTGVECVW*RSLLLRWRPSNTAEDD 6147

Query: 82   PNSSVVHVSSTEGGDNSGNGTQEKIAEGAT 111
                +  V +  GGD +        AEG+T
Sbjct: 6146 AMPGIDPVRTLGGGDGARRCVGRGGAEGST 6057


>supercont1.1093 of Sphaeroforma arctica JP610
          Length = 23144

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +2

Query: 1     MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
             +G  ++ +LIT +++P+F        LY   +L    VL    S   R  WR++L     
Sbjct: 17777 IG*CALIMLITPRVVPLFMQ*IKSCVLYSLDVLYVGSVLS*GVSLCARCYWRKVLVCISG 17956

Query: 61    RCVWKSFLLDAYKQ---VKLGEDAPNSS 85
             R V KS    ++     VKLG D  N S
Sbjct: 17957 RLVHKSIHHQSHDVP*IVKLGNDLLNKS 18040


>supercont1.9041 of Sphaeroforma arctica JP610
          Length = 1139

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  LLLSRSKSTRGEWRRMLTSE-GLRCVWKSFLL 69
           +L  R  ST+G+WRR+  SE G RCV    LL
Sbjct: 696 ILPMRQASTKGQWRRLAISEFGCRCVVYCHLL 791


>supercont1.1436 of Sphaeroforma arctica JP610
          Length = 15110

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 39  LLLSRSKSTR---GEWRRMLTSEGLRCVWKSFLLDAY 72
           L+ S S ST    G W RML S+G+ C W  ++L A+
Sbjct: 419 LVTSLSISTADEGGAWGRMLASDGVVCTWVCWVLCAW 529


  Database: /users/rg/didac/GENOMES/S.arctica/genome.fa
    Posted date:  Sep 29, 2011  6:14 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,685,466
Number of Sequences: 15618
Number of extensions: 580766
Number of successful extensions: 2226
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 1642
length of query: 265
length of database: 40,529,447
effective HSP length: 107
effective length of query: 158
effective length of database: 38,858,321
effective search space: 6139614718
effective search space used: 6139614718
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)