TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6461 | | 1 to 5278 33 0.20 Lt_contig6382 | | 1 to 15806 32 0.33 Lt_contig6935 | | 1 to 16768 31 0.97 Lt_contig5200 | | 1 to 6516 30 1.3 Lt_contig445 | | 1 to 6961 30 1.3 Lt_contig1342 | | 1 to 8040 30 2.2 Lt_contig7178 | | 1 to 12393 29 2.8 Lt_contig5745 | | 1 to 4219 29 3.7 Lt_contig4053 | | 1 to 2905 28 4.8 Lt_contig117 | | 1 to 15752 25 5.6 Lt_contig5815 | | 1 to 5241 28 6.3 Lt_contig3530 | | 1 to 3911 28 8.2 Lt_contig5995 | | 1 to 7999 28 8.2 >Lt_contig6461 | | 1 to 5278 Length = 5278 Score = 33.1 bits (74), Expect = 0.20 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -1 Query: 42 SRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKL 77 +R +G WR L ++G RC +S LLD VKL Sbjct: 4372 ARKSPPQGRWREALCAKGCRCT*RSILLDTALPVKL 4265 >Lt_contig6382 | | 1 to 15806 Length = 15806 Score = 32.3 bits (72), Expect = 0.33 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Frame = +3 Query: 172 IPGDSSLSFEVKKHQNQEDRCAAAQ-----QLLERFSLPPQCRVVADRMDNNANIAYGV 225 +P ++S+S+ + H + +R A++ L R + P+C VA + D+NAN + V Sbjct: 1722 LPSNASVSWRARFHGDNRNRNVASRFRVSPGALLRVKIIPKCEPVAQQWDHNANARFAV 1898 >Lt_contig6935 | | 1 to 16768 Length = 16768 Score = 30.8 bits (68), Expect = 0.97 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 5/83 (6%) Frame = +1 Query: 158 LVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDN 217 +VY+DE DGW+ P SLS + + R A QL E F LPP +VV + Sbjct: 8416 MVYVDEECVDDGWS-PLLQSLSQAATEELGAQWRHARFLQLCE-FLLPPLLQVVREECKE 8589 Query: 218 -----NANIAYGVAFERVCIVQR 235 NA +A + + VQ+ Sbjct: 8590 YVRTCNAQLALNLFYLMKAAVQQ 8658 >Lt_contig5200 | | 1 to 6516 Length = 6516 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 55 LTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNS-GNGTQEKIAEGATCH 113 L+ E +R +W+S +LDA + L D + + ST +N+ G+ +Q+ E A Sbjct: 4276 LSDEDIRALWESGILDAETLLSLLSDISSGTPSRTESTVVPENTRGDNSQDASHEDAPAD 4455 Query: 114 LL 115 LL Sbjct: 4456 LL 4461 >Lt_contig445 | | 1 to 6961 Length = 6961 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -1 Query: 86 VVHVSSTEGGDNSGNGTQ--EKIAEGA-TCHLLDFASPERPLVVNFGSATUPPF 136 +VH+ D +GTQ ++ A+G + H+ F P LVV F T PPF Sbjct: 5647 IVHLK*NASSDGCQDGTQNPKRTAKGGVSMHVQSFPLPRPTLVVCFVQHTFPPF 5486 >Lt_contig1342 | | 1 to 8040 Length = 8040 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = -1 Query: 23 LFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVW 64 L+ + + LL HV LL KSTR + R+ EG+R W Sbjct: 5718 LYHRTFSCIGLLIHVRLLTQTHKSTRTQCHRVSRKEGMRRWW 5593 >Lt_contig7178 | | 1 to 12393 Length = 12393 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 99 GNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLV 147 G+G+ ++A DFA+P+ P+VV+ PP +PAF + Sbjct: 2374 GSGSAARVARCGLSEAADFAAPDPPVVVHAWWRNAPP----VPAFASAI 2508 >Lt_contig5745 | | 1 to 4219 Length = 4219 Score = 28.9 bits (63), Expect = 3.7 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -1 Query: 191 RCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVC 231 RC A QQ E+ PP C A R ++N F R C Sbjct: 2236 RCRAEQQQYEQQRPPPACHDAAHRTNSNEQY*VACLFTRRC 2114 >Lt_contig4053 | | 1 to 2905 Length = 2905 Score = 28.5 bits (62), Expect = 4.8 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 10/93 (10%) Frame = +2 Query: 41 LSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDN-SG 99 LSR + RG WRRM + C+ + + L + AP S V + S G G Sbjct: 1634 LSRRVARRGSWRRMTNACASACLCVEGVWGGGRSSSL-KTAPQSPRVMLRS--GSPRLYG 1804 Query: 100 NGTQEKIAEGATC---------HLLDFASPERP 123 E +A GA C HLL +P P Sbjct: 1805 AAAHELLASGAGCPPALSFGGSHLLPLPAPPTP 1903 >Lt_contig117 | | 1 to 15752 Length = 15752 Score = 24.6 bits (52), Expect(2) = 5.6 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +1 Query: 167 SDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQ 197 S+G A+ G+ + +H N+ RCAAA + Sbjct: 4615 SEGGALDGERR*LQQADEHSNKGRRCAAAAE 4707 Score = 21.6 bits (44), Expect(2) = 5.6 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 196 QQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAY 240 Q LL R S + + + ++DN++ + V R + RQ +AY Sbjct: 4694 QLLLSRTSEVAKTYLPSLQVDNSSGMYIEVLSLRTSVCMRQYVAY 4828 >Lt_contig5815 | | 1 to 5241 Length = 5241 Score = 28.1 bits (61), Expect = 6.3 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 119 SPERPLVVNFGSATUPPFTSQLPAF 143 +P PL++++ T P FTS +P F Sbjct: 4715 APTHPLIISYPLLTHPKFTSHVPPF 4789 >Lt_contig3530 | | 1 to 3911 Length = 3911 Score = 27.7 bits (60), Expect = 8.2 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Frame = -2 Query: 119 SPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYID-EAHPSDGWAIP 173 +P RP ++ +A PFT QLP F + F FL V HP+ P Sbjct: 3751 NPSRPFLMCISTAALHPFTHQLPLFLHMT--FFFFVPFLFVTTSFSLHPAPSHWFP 3590 >Lt_contig5995 | | 1 to 7999 Length = 7999 Score = 27.7 bits (60), Expect = 8.2 Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 6/89 (6%) Frame = -2 Query: 61 RCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDF--- 117 RC W D V L SS H + GGD +A+ + CH+LD Sbjct: 282 RCSWLFLCTDRLACVSLHP----SSDHHTRAQRGGDGDFPQRTPLLADISVCHVLDILCG 115 Query: 118 --ASPERPLVVNFG-SATUPPFTSQLPAF 143 A P L+ A+ PPF LP F Sbjct: 114 ADAEPTASLLGPLDLRASAPPF---LPTF 37 Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa Posted date: Sep 30, 2011 12:11 AM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,668,788 Number of Sequences: 7267 Number of extensions: 222895 Number of successful extensions: 1144 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1121 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1144 length of query: 265 length of database: 10,532,946 effective HSP length: 98 effective length of query: 167 effective length of database: 9,820,780 effective search space: 1640070260 effective search space used: 1640070260 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)