TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_111                                                      28   9.2  

>PHYCAscaffold_111 
          Length = 91577

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = -3

Query: 197   VVDTMQNQSSQLYAALPERLYIIQEGRILYKGKS 230
             V+ T+   SS+L+A L ++LY++ +G  +Y+GK+
Sbjct: 55239 VIATIHQPSSELFA-LFDQLYLLSDGSPVYQGKA 55141


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,304,074
Number of Sequences: 917
Number of extensions: 295580
Number of successful extensions: 1736
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 659
length of query: 249
length of database: 21,341,249
effective HSP length: 102
effective length of query: 147
effective length of database: 21,247,715
effective search space: 3123414105
effective search space used: 3123414105
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)