TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
         (198 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ...    87   7e-18

>gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun
              sequence
          Length = 941765

 Score = 87.0 bits (214), Expect = 7e-18
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = +3

Query: 20     GEAVELRSLWREHACVVAGLRRFGXVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQ 79
              G  +   SLW +  CV+  LRRFG ++CR  A DLS++   LD  G+ L+G+G E  GL+
Sbjct: 368553 GNIIPFSSLWEKKRCVIFCLRRFGCLICRLQAMDLSTIKPFLDMLGISLIGIGFENYGLE 368732

Query: 80     EFLDGDYFAGELYLDESKQLYKELGFKR 107
              +F+DG +FAG++Y+D S+ +Y+ +   R
Sbjct: 368733 DFIDGKFFAGDVYIDSSRSVYRAMKLGR 368816


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.322    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,470,055
Number of Sequences: 25
Number of extensions: 61503
Number of successful extensions: 161
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 154
Number of HSP's gapped (non-prelim): 21
length of query: 198
length of database: 10,339,736
effective HSP length: 95
effective length of query: 103
effective length of database: 10,337,361
effective search space: 1064748183
effective search space used: 1064748183
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 101 (43.5 bits)