TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
         (198 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

 ***** No hits found ******

  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.322    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,268,623
Number of Sequences: 1089
Number of extensions: 131044
Number of successful extensions: 590
Number of sequences better than 1.0e-04: 0
Number of HSP's better than  0.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 160
length of query: 198
length of database: 12,349,441
effective HSP length: 96
effective length of query: 102
effective length of database: 12,244,897
effective search space: 1248979494
effective search space used: 1248979494
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 101 (43.5 bits)