TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo
sapiens # Complete
         (226 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

 ***** No hits found ******

  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,154,095
Number of Sequences: 15618
Number of extensions: 432534
Number of successful extensions: 1499
Number of sequences better than 1.0e-04: 0
Number of HSP's better than  0.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 1049
length of query: 226
length of database: 40,529,447
effective HSP length: 105
effective length of query: 121
effective length of database: 38,889,557
effective search space: 4705636397
effective search space used: 4705636397
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)