TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000027_1.0 # Protein # Selenoprotein U2 (SelU2) # Homo
sapiens # Complete
         (226 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340502181|gb|GL984204.1| Ichthyophthirius multifiliis unplace...    64   1e-10

>gi|340502181|gb|GL984204.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251243, whole genome shotgun
             sequence
          Length = 165186

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
 Frame = -1

Query: 69    YICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTGY-SHEIYVDPEREIYK 127
             ++C++++  +++I  + L   NV L VIG      I  FC  TG+  ++ +VDPER IY 
Sbjct: 81930 FVCRDFIRSISRISWNIL**KNVDLKVIGCGKTSGINSFCVDTGFLPNKCFVDPERVIY* 81751

Query: 128   RLGMKRGEE---IASSGQSPHIKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGP 184
             RLG+ R E+   +     S    + L  G    LW ++        GD    GG+++ GP
Sbjct: 81750 RLGLTRVEKPSGLIGKN*SAETTTGLCCG---FLWTSIAFCRRGV*GDVF*LGGSILAGP 81580

Query: 185   GNNIHFIHRDRNRLDHKPINSVLQLVGVQH 214
             G    F   D +  DH    ++++L+G+ +
Sbjct: 81579 G*YFFFKFNDESPEDHISYVAMIELLGISY 81490


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.319    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,376,461
Number of Sequences: 2017
Number of extensions: 82173
Number of successful extensions: 132
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 114
Number of HSP's gapped (non-prelim): 19
length of query: 226
length of database: 16,266,656
effective HSP length: 99
effective length of query: 127
effective length of database: 16,066,973
effective search space: 2040505571
effective search space used: 2040505571
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 103 (44.3 bits)