TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete  #RRPGX
         (229 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ...    69   4e-12

>gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun
              sequence
          Length = 941765

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
 Frame = +3

Query: 69     LWEKNGAVIMAVRRPGXFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYF 128
              LWEK   VI  +RR G  +CR +A DLS++K  LD LG+ L  +  E+   E      +F
Sbjct: 368577 LWEKKRCVIFCLRRFGCLICRLQAMDLSTIKPFLDMLGISLIGIGFENYGLEDFIDGKFF 368756

Query: 129    KGEIFLDEKKKFYGPQRRKMMFMGF---------IRLGVWYNFFRAWNGGFSGNLEGEGF 179
               G++++D  +  Y  +  K+  MGF          RL V+    R  +     N +G+G 
Sbjct: 368757 AGDVYIDSSRSVY--RAMKLGRMGFWESVIGFTDSRLSVYRKTARDMD--LPSNFKGDGL 368924

Query: 180    I-----------------------LGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAA 216
                                      L G  V+G   QG   E+R+K F D  N+  +++A 
Sbjct: 368925 YV*TKN*RVDDNCIYSNYLYFYRQLSGCVVIGPQPQGTHFEYRQKMFLDIFNIRDIIDAC 369104

Query: 217    KMIKPQ 222
              +   P+
Sbjct: 369105 QRPMPK 369122


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.322    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,246,884
Number of Sequences: 25
Number of extensions: 76437
Number of successful extensions: 248
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 8
length of query: 229
length of database: 10,339,736
effective HSP length: 96
effective length of query: 133
effective length of database: 10,337,336
effective search space: 1374865688
effective search space used: 1374865688
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 102 (43.9 bits)