TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000062_1.0 # Protein # Selenoprotein U (SelU) #
Caenorhabditis elegans # Complete
         (219 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced ...    53   2e-07

>gi|328867405|gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EU5ZYIE01EUG8B-5, whole genome shotgun
              sequence
          Length = 941765

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
 Frame = +3

Query: 65     SLFKKGPIMVMAVRRPGXMLCRREAAELHTLLPLLKEKGIELAAVVHETRGANEF-KSWF 123
              SL++K   ++  +RR G ++CR +A +L T+ P L   GI L  +  E  G  +F    F
Sbjct: 368574 SLWEKKRCVIFCLRRFGCLICRLQAMDLSTIKPFLDMLGISLIGIGFENYGLEDFIDGKF 368753

Query: 124    SGGDVYLDTDRTFYGPNERW-LPVWMGFLRF-GTYSNVYK--AKKAKVEGNMEGEG 175
                GDVY+D+ R+ Y   +   +  W   + F  +  +VY+  A+   +  N +G+G
Sbjct: 368754 FAGDVYIDSSRSVYRAMKLGRMGFWESVIGFTDSRLSVYRKTARDMDLPSNFKGDG 368921


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,085,171
Number of Sequences: 25
Number of extensions: 80183
Number of successful extensions: 237
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 10,339,736
effective HSP length: 96
effective length of query: 123
effective length of database: 10,337,336
effective search space: 1271492328
effective search space used: 1271492328
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 102 (43.9 bits)