TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.927 of Sphaeroforma arctica JP610                           86   1e-16

>supercont1.927 of Sphaeroforma arctica JP610
          Length = 30644

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 42/87 (48%), Positives = 58/87 (66%)
 Frame = +2

Query: 142  VTGGQTVFNPWPLLGGCAMATMLQSQLVTTDRAVPGNVIVLTKPLGTQVTGNLALWMMNE 201
            VTGGQ+V NPWP+LGG A + ML + ++T + A  G+V+VLTKPLGTQ+  NL  W +++
Sbjct: 3884 VTGGQSVMNPWPILGGVAQSVMLATDVITPENARAGDVMVLTKPLGTQLAVNLHQW-LDQ 4060

Query: 202  AQWGKVVKAGLDVETCTRAVKMGDLSM 228
             +W   VK  +D ET  RA  +   SM
Sbjct: 4061 PKWWDQVKHVIDAETVIRAYNVASASM 4141



 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +3

Query: 64   VLVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMIL 109
            V+VS+TDF  P+  DP+ QG IA AN LSD+YAVGA  ++N+LMIL
Sbjct: 2592 VMVSTTDFFYPLVDDPYTQGQIACANVLSDMYAVGARKVDNMLMIL 2729



 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 25/53 (47%), Positives = 39/53 (73%)
 Frame = +1

Query: 228  MMTLNKNGCRLMREFGALGATDVTGFGLVGHADNLARVQKSGASIEIDTVPTI 280
            ++ LN  G +LM +  A  ATDVTGFG++GHA+NLA+ QK+  ++ ID++P +
Sbjct: 4585 LLRLNMVGAQLMHKHNARAATDVTGFGILGHANNLAQAQKAKLTLRIDSLPGV 4743


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,386,483
Number of Sequences: 15618
Number of extensions: 478107
Number of successful extensions: 1669
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 986
length of query: 330
length of database: 40,529,447
effective HSP length: 109
effective length of query: 221
effective length of database: 38,827,085
effective search space: 8580785785
effective search space used: 8580785785
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)