TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6185  |  | 1 to 5850                                         231   4e-61

>Lt_contig6185  |  | 1 to 5850
          Length = 5850

 Score =  231 bits (590), Expect = 4e-61
 Identities = 140/338 (41%), Positives = 196/338 (57%), Gaps = 12/338 (3%)
 Frame = -3

Query: 2    WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDSPDCSMVPV--- 58
            +DP SLGL  +F LT ++  KG  CK+   +L + L ++       +   DCS+VP+   
Sbjct: 5650 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATPGQKDVGVDCSIVPLQRT 5471

Query: 59   -GDGERV-LVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMS 116
               GE + LVS+TDF  P   DPF QG I AAN LSDLY++G  D + +LM+L  S +M 
Sbjct: 5470 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMD 5291

Query: 117  PLEQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQLV-TTDRAV 175
              E+ +TT+++++GF      A T VTGGQTV NPWPL+GG AMA + ++++V  T    
Sbjct: 5290 EHERLITTREIMKGFAERAHLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLR 5111

Query: 176  PGNVIVLTKPLGTQVTGNLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKN 234
             G+++VLTKPLG QV  NL  W++  +  +   +K  +  E       M   SM  LN+ 
Sbjct: 5110 TGDILVLTKPLGCQVAVNLKQWLLRPSPLYEDAIKGHISPEEIEELYNMATDSMRRLNRE 4931

Query: 235  GCRLMREFGALGATDVTGFGLVGHADNLARVQKSGAS-----IEIDTVPTIQGCKTLSMV 289
            G RLMR+ GA GATDVTGFG++GHA+N    Q  G +     + ++ +P  +     S  
Sbjct: 4930 GARLMRKHGAHGATDVTGFGILGHANNFGAAQTMGDAPRSLCLVLERLPMFKTAVAASK- 4754

Query: 290  RPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKFIAAL 327
            R N + Y LLEG + ETSGGLLV   +   AE F A L
Sbjct: 4753 RMNDK-YRLLEGYSPETSGGLLVAFPNTTAAEAFCAEL 4643


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,647,191
Number of Sequences: 7267
Number of extensions: 173319
Number of successful extensions: 770
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 609
length of query: 330
length of database: 10,532,946
effective HSP length: 100
effective length of query: 230
effective length of database: 9,806,246
effective search space: 2255436580
effective search space used: 2255436580
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)