TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                             231   4e-61

>contig_36
          Length = 2713248

 Score =  231 bits (590), Expect = 4e-61
 Identities = 140/340 (41%), Positives = 196/340 (57%), Gaps = 12/340 (3%)
 Frame = -1

Query: 2       WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDSPDCSMVPV--- 58
               +DP SLGL  +F LT ++  KG  CK+   +L + L ++       +   DCS+VP+   
Sbjct: 2120613 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTPGQKDVGMDCSIVPLHHT 2120434

Query: 59      -GDGERV-LVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMS 116
                  GE + LVS+TDF  P   DPF QG I AAN LSDLY++G  D + +LM+L  S +M 
Sbjct: 2120433 NSKGEALFLVSTTDFFFPSVSDPFLQGQIGAANVLSDLYSMGIPDCDTMLMLLAASTEMD 2120254

Query: 117     PLEQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQLV-TTDRAV 175
                 E+ +TT+++++GF      A T VTGGQTV NPWPL+GG AMA + ++++V       
Sbjct: 2120253 EHERLITTREIMKGFAERARLATTTVTGGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLC 2120074

Query: 176     PGNVIVLTKPLGTQVTGNLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKN 234
                G+++VLTKPLG QV  NL  W++  +  + + +   +  E       M   SM  LN+ 
Sbjct: 2120073 AGDILVLTKPLGCQVAVNLKQWLLRPSPLYEEAIAGHISPEEIEELYNMATDSMRRLNRE 2119894

Query: 235     GCRLMREFGALGATDVTGFGLVGHADNLARVQKSGAS-----IEIDTVPTIQGCKTLSMV 289
               G RLMR+ GA GATDVTGFG++GHA+N    Q  G +     + ++ +P  +     S  
Sbjct: 2119893 GARLMRKHGAHGATDVTGFGILGHANNFGAAQTVGDAPRSLCLVLERLPMFKTAVAASK- 2119717

Query: 290     RPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKFIAALRA 329
               R N + Y LLEG +AETSGGLLV       AE F A L A
Sbjct: 2119716 RMNDK-YRLLEGYSAETSGGLLVAFPSTTAAEAFCAELTA 2119600


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,187,422
Number of Sequences: 36
Number of extensions: 183867
Number of successful extensions: 822
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 45
length of query: 330
length of database: 10,814,999
effective HSP length: 101
effective length of query: 229
effective length of database: 10,811,363
effective search space: 2475802127
effective search space used: 2475802127
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)