TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced ...   184   8e-47

>gi|328864870|gb|GL883029.1| Dictyostelium fasciculatum unplaced genomic
              scaffold Scf_EUAJFUG02HR96I-5, whole genome shotgun
              sequence
          Length = 3408800

 Score =  184 bits (467), Expect = 8e-47
 Identities = 116/282 (41%), Positives = 155/282 (54%), Gaps = 28/282 (9%)
 Frame = -2

Query: 71     FLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMSPLEQTVTTKKMIEG 130
              F  P   DP+  G IA AN LSDLY+ G  D +N+LMIL  S  M+P ++T +T+ MI G
Sbjct: 338566 FFFPNCDDPYLMGKIACANVLSDLYSFGIADCDNMLMILAGSTDMTPEQRTWSTRGMING 338387

Query: 131    FNAC------------------------CEEAGTKVTGGQTVFNPWPLLGGCAMATMLQS 166
              FN                           + AGT +TGGQTV NPWP++GG A + + + 
Sbjct: 338386 FNGIYLHQR**FFLLFINLFYFFYSLDNAKIAGTNITGGQTVKNPWPIIGGVATSVVKKD 338207

Query: 167    QLVTTDRAVPGNVIVLTKPLGTQVTGNLALWMMN-EAQWGK---VVKAGLDVETCTRAVK 222
              + +    AV G+V+VLTKPLGTQV  N   W+     +W +   VV     +E    AV 
Sbjct: 338206 EFIMPVGAVAGDVLVLTKPLGTQVCANAHQWLQGFPEKWERITGVVTREQIIECWAYAVN 338027

Query: 223    MGDLSMMTLNKNGCRLMREFGALGATDVTGFGLVGHADNLARVQKSGASIEIDTVPTIQG 282
                  SM  LN+ G R+M + GA   TDVTGFGL+GH+ NLA+ Q +    EIDT+P +QG
Sbjct: 338026 ----SMARLNRTGARMMMKHGAHACTDVTGFGLLGHSMNLAKNQNAAVYFEIDTLPIMQG 337859

Query: 283    CKTLSMVRPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKFI 324
                 +        +Y LL+G +AETSGGLLV L   + A+ FI
Sbjct: 337858 MVEIDATL--NYNYNLLKGMSAETSGGLLVAL-PADKAQAFI 337742


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,072,712
Number of Sequences: 25
Number of extensions: 105289
Number of successful extensions: 402
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 66
length of query: 330
length of database: 10,339,736
effective HSP length: 100
effective length of query: 230
effective length of database: 10,337,236
effective search space: 2377564280
effective search space used: 2377564280
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)