TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig765  |  | 1 to 162644                                        230   1e-60

>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score =  230 bits (587), Expect = 1e-60
 Identities = 137/334 (41%), Positives = 193/334 (57%), Gaps = 12/334 (3%)
 Frame = +3

Query: 2      WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDSPDCSMVPV--- 58
              +DP SLGL  +F LT ++  KG  CK+   +L + L  +       +   DCS+VP+   
Sbjct: 101625 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSPGQKDVGMDCSIVPLHHT 101804

Query: 59     -GDGERV-LVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMS 116
               G GE + LVS+TDF  P   DPF QG I AAN LSDLY++G    + +LM+L  S  M 
Sbjct: 101805 NGKGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCDTMLMLLAASTDMD 101984

Query: 117    PLEQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQLVTTDRAV- 175
                E+ VTT++++ GF      A T VTGGQTV NPWPL+GG AMA + ++++V     + 
Sbjct: 101985 EDERLVTTREIMRGFAERARLAATSVTGGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLR 102164

Query: 176    PGNVIVLTKPLGTQVTGNLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKN 234
               G+V+VLTKPLG Q+  NL  W+M  +  +  V++  +  +           SM  LN+ 
Sbjct: 102165 AGDVLVLTKPLGCQIAMNLKQWLMRPSPLYEDVIEGHISRDEIEELYNKATDSMRRLNRE 102344

Query: 235    GCRLMREFGALGATDVTGFGLVGHADNLARVQKSGAS-----IEIDTVPTIQGCKTLSMV 289
              G RLM + GA GATDVTGFG++GHA+N    Q  G++     + +D +P ++     S +
Sbjct: 102345 GARLMLKHGAHGATDVTGFGILGHANNFGAAQAVGSAPQSLCLVLDRLPMLKTAVAASRL 102524

Query: 290    RPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKF 323
                +   Y L EG +AETSGGLLV L  +E AE F
Sbjct: 102525 MQD--KYRLFEGYSAETSGGLLVALASREAAEAF 102620


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,208,711
Number of Sequences: 1089
Number of extensions: 190833
Number of successful extensions: 668
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 130
length of query: 330
length of database: 12,349,441
effective HSP length: 102
effective length of query: 228
effective length of database: 12,238,363
effective search space: 2790346764
effective search space used: 2790346764
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)