TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig765  |  | 1 to 162644                                        218   8e-57

>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score =  218 bits (555), Expect = 8e-57
 Identities = 148/399 (37%), Positives = 198/399 (49%), Gaps = 16/399 (4%)
 Frame = +3

Query: 38     FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGL-TRPDVRPPLGRGLVGGQEEA 96
              F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  + T P            GQ++ 
Sbjct: 101625 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAVATSP------------GQKD- 101765

Query: 97     SQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMG 151
                                  +GMD  ++PL H       L LV TTDFF+P V DP++ G
Sbjct: 101766 --------------------VGMDCSIVPLHHTNGKGEALFLVSTTDFFFPSVADPFLQG 101885

Query: 152    RIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXX 211
               I  ANVLSDLY+MGI  CD                R   T  +++GF +          
Sbjct: 101886 HIGAANVLSDLYSMGIAHCDTMLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVT 102065

Query: 212    XXXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPE 270
                    NPW +IGGVA  V    E + P   +  GDVLVLTKPLG Q+A+N  QWL  P 
Sbjct: 102066 GGQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMRPS 102245

Query: 271    RW--NKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQN 328
                  + ++  +SR+E+E  Y +A  +M  LNR  A LM    AH ATD+TGFGILGH+ N
Sbjct: 102246 PLYEDVIEGHISRDEIEELYNKATDSMRRLNREGARLMLKHGAHGATDVTGFGILGHANN 102425

Query: 329    LAKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICL-PRE 381
                  Q        +  V+  LP++    A S+    ++ L +G SAETSGGLL+ L  RE
Sbjct: 102426 FGAAQAVGSAPQSLCLVLDRLPMLKTAVAASRLMQDKYRLFEGYSAETSGGLLVALASRE 102605

Query: 382    QAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKP 420
               A  F  E++ +    G  +WIVG VE     AR  D P
Sbjct: 102606 AAEAFQKELEEA--DGGCPSWIVGRVE-----ARAADAP 102701


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,784,205
Number of Sequences: 1089
Number of extensions: 288084
Number of successful extensions: 1628
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 700
length of query: 448
length of database: 12,349,441
effective HSP length: 104
effective length of query: 344
effective length of database: 12,236,185
effective search space: 4209247640
effective search space used: 4209247640
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)